>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = -3

Query: 352 KTGEEDKAAAPSGEHKPRA 296
           KTGEEDKAAA +GEHKP A
Sbjct: 244 KTGEEDKAAAATGEHKPSA 262

>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 90  HPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS*HGLKLKANTTHA 245
           HP P S P+  P+    H HP P+ +  P  Q  S P   HG +L  +T+++
Sbjct: 213 HPHPHSHPHSHPHP---HPHPHPHQIPHPHPQPHSQP---HGHRLLRSTSNS 258

>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein|
          Length = 718

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 339 RTRPPPLQASTSPELDRRRAPRLITGPPLNCWRVSCXXXXXVRVKMEG 196
           RT PPP   S SP L R RA  L    P N   V+       ++K EG
Sbjct: 670 RTGPPPPPLSPSPVLARHRANALTNDGPTN---VAALSALLTKLKREG 714

>COBL6_ARATH (O04500) COBRA-like protein 6 precursor|
          Length = 454

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 139 SVWVYGLQFGPESGPGCCLSLFAYYYGHFV 50
           +V VY  QF     P CC+SL A+YY + V
Sbjct: 217 AVCVYS-QFRSSPSPKCCVSLSAFYYQNIV 245

>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 78  KLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS 206
           K +QHP P+     SP  Q   +HPSPN    P   ++  P S
Sbjct: 126 KQQQHPSPNQQQPPSPNQQ---QHPSPNQQQHPSPNQQQHPNS 165

>TRUB_LEGPA (Q5X1C5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 49  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 162
           T    NN+   L+ +QD+ L Q  A +  ++ +I+HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAIQHLT 242

>ISPZ_HAEDU (Q7VKZ1) Probable intracellular septation protein|
          Length = 183

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 167 KPVR*RMLVFSLGIRASVWSRVR-SWMLFKFICLLLRAL 54
           KPV   +L   L +   VW+R+   W +F  IC+L+  +
Sbjct: 98  KPVVKMLLAKELSLPTQVWNRLNLGWAIFFIICMLINII 136

>ALU4_HUMAN (P39191) Alu subfamily SB2 sequence contamination warning entry|
          Length = 603

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 334 KAAAPSGEHKPRA*SPPCPETHHRTSIKLLACVVFALSLSPCQDG 200
           K   P   H P + SP    T  R   +L+ C+     +SPC  G
Sbjct: 430 KLRFPGSRHSPASASPVAGTTGARHRARLIFCIFSRDGVSPCXPG 474

>TRUB_LEGPL (Q5WT38) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 49  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 162
           T    NN+   L+ +QD+ L Q  A +  ++ +++HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242

>TRUB_LEGPH (Q5ZRV6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 49  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 162
           T    NN+   L+ +QD+ L Q  A +  ++ +++HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242

>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel-1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 82   LNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFKDDQSLHLDTDLNLK 228
            ++N+ +  LDQT+    KL+ +++     T    +D+Q L ++T L L+
Sbjct: 1798 VHNVLEYELDQTQGMKQKLSEALKEWLTSTSPAARDNQKLLINTILYLR 1846

>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +1

Query: 106  LDQTEARIPKLNTSIRHLTGFTDRTFK------DDQSLHLDTDLNLKQTRHTPTI*WRSG 267
            L +TE  +  ++T + H++    +  K        + LH+    +L+  +H     W SG
Sbjct: 836  LRETELHVSDVDTDVTHISFTLTQAPKHGHMQISGRPLHVGGQFHLEDIKHGRISYWNSG 895

Query: 268  DES 276
            DES
Sbjct: 896  DES 898

>CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (CRK2)|
          Length = 296

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 75  NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQR 188
           N+   HP P  GP   PY Q     P PN  + P   R
Sbjct: 197 NQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFAR 234

>IF2_CHLPN (Q9Z8M1) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 7   KSLISRDNAQQ*TNTQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFK 186
           K + S    +  T+    +NN++   N       +++ A  PK +   ++LT F DR+ K
Sbjct: 206 KPVASDKTGKPGTSEGGEQNNREKQFN-----PANRSPASGPKRDAGKKNLTDFRDRSKK 260

Query: 187 DDQSL 201
            D+SL
Sbjct: 261 SDESL 265

>SH22A_MOUSE (Q9QXK9) SH2 domain protein 2A (Lck-associated adapter protein)|
           (Lad) (Rlk/Itk-binding protein) (Ribp)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 354 TRQGRRTRPP-PLQASTSPELDRRRAPRLITGPPLN 250
           T Q  R RPP P +    PE+    A RL   PP+N
Sbjct: 262 TSQASRPRPPIPAKPQLPPEVYTSPASRLHQAPPIN 297

>CRK_CHICK (Q04929) Proto-oncogene C-crk (P38)|
          Length = 305

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 75  NKLKQHPGPDSGPN*SPYTQTEHKHPSPN 161
           N+   HP P  GP   PY Q     P PN
Sbjct: 205 NQDSSHPQPLGGPEPGPYAQPSINTPLPN 233

>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein|
          Length = 715

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 330 PPPLQASTSPELDRRRAPRLITGPPLNCWRVSCXXXXXVRVKMEG 196
           PPP   S SP L R RA  L    P N   V+       ++K EG
Sbjct: 670 PPPPPLSPSPVLARHRANALTNDGPTN---VAALSALLTKLKREG 711


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,535,469
Number of Sequences: 219361
Number of extensions: 1128348
Number of successful extensions: 2915
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2911
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)