ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart51e03 |
|---|---|
| Clone Library Name | barley_pub |
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 35.0 bits (79), Expect = 0.046 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +1 Query: 169 GSPGRRTLPWIPVAVSPKHATAGARGGRSPRG--WLPRLARDMGP 297 G PG + P +P SP HAT G +G R P+G LP L MGP Sbjct: 1213 GPPGPQGQPGLPG--SPGHATEGPKGDRGPQGQPGLPGLPGPMGP 1255
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 32.7 bits (73), Expect = 0.23 Identities = 22/56 (39%), Positives = 23/56 (41%) Frame = +1 Query: 169 GSPGRRTLPWIPVAVSPKHATAGARGGRSPRGWLPRLARDMGPVPAAELGIGGADP 336 G GR P P H+ AG G R P ARD GP P E G GG P Sbjct: 229 GGRGRARTP------GPVHSAAGGPGSRRRS---PGAARDPGPEPGEERGGGGKPP 275
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 31.6 bits (70), Expect = 0.51 Identities = 23/52 (44%), Positives = 24/52 (46%) Frame = +3 Query: 150 LTPDDYWIAWPAHAALDPGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSG 305 L P A P AA G P+ GRR P P GL AAA RHG G G Sbjct: 36 LPPQQQQPAQPGPAASPAGPPAPRGPGGRRAE-PCP-GLPAAAMGRHGGGGG 85
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +3 Query: 3 KISLHYQSKDSA*VSDRVSKQCRLLRGSVKSTS*WVGESILLCFSRA 143 ++++ +K SA S R QC + GS T W G S++ C A Sbjct: 2756 EVNMVASAKQSAFYSCRTEAQCAAVHGSALRTQKWHGASLVTCSQEA 2802
>TINAG_HUMAN (Q9UJW2) Tubulointerstitial nephritis antigen (TIN-Ag)| Length = 476 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +3 Query: 174 AWPAHAALDPGRRFPQACDGRRTRRPIPEGLVAA-ARTRHGPGSGRRARNWW 326 +W A R GR T P+ L++ A+ RHG SG R WW Sbjct: 243 SWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDRAWW 294
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 290 MSRASRGNQPLGDRPPRAPAVACLGETATG 201 ++R R ++ G PPR P AC TATG Sbjct: 2964 LARGYRRSRSRGCCPPRCPTPACAARTATG 2993
>LAH1_YEAST (P33399) La protein homolog (La ribonucleoprotein) (La autoantigen| homolog) Length = 275 Score = 29.3 bits (64), Expect = 2.5 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +3 Query: 69 RLLRGSVKSTS*WVGESILLCFSRARALTPDDYWIAWPAHAALDPGRRFPQACDGRRTRR 248 R LR + + WV S + F+R + P D I AL + DG +R Sbjct: 50 RFLRTTAEKNDGWVPISTIATFNRMKKYRPVDKVI-----EALRSSEILEVSADGENVKR 104 Query: 249 PIPEGLVAAARTR 287 +P L AA R Sbjct: 105 RVPLDLTAARNAR 117
>YEG7_YEAST (P39983) Hypothetical 27.2 kDa protein in PCM1-HAT2 intergenic| region Length = 233 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 187 TLPWIPVAVSPKHATAGARGGRSPRGWLPRLARDMG 294 TLP P + P H +R R+ RGW +L +G Sbjct: 47 TLPHFPKTLPPNHKDCVSRKHRARRGWSSQLKNLLG 82
>ATG1_CRYNE (Q5K8D3) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 988 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/60 (33%), Positives = 24/60 (40%) Frame = +3 Query: 135 SRARALTPDDYWIAWPAHAALDPGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRA 314 S A+ P A +A DPG Q+ R RPI +A R G G GR A Sbjct: 444 SEPTAIIPPSPSSAPTPTSAPDPGLTTQQSPTSRANPRPIITAASSAQRRMSGKGDGREA 503
>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)| Length = 257 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Frame = +3 Query: 222 ACDGRRTRRP--IPEGLVAAARTRHGPGS------GRRARNWWCGSR 338 +C G RP +P G++AAAR G G+ RA CG+R Sbjct: 10 SCSGSGAARPHSLPRGMIAAARCPQGSGAPEPAPRSPRAGTAGCGAR 56
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 169 GSPGRRTLPWIPVAVSPKHATAGARGGRSPRGWLPRLARDMGPV-PAAELGIGG 327 G PG + P +P +P H G +G R P+G P L GP+ P GI G Sbjct: 1213 GPPGPQGQPGLPG--TPGHPVEGPKGDRGPQG-QPGLPGHPGPMGPPGFPGING 1263
>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1) Length = 1112 Score = 28.1 bits (61), Expect = 5.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +3 Query: 279 RTRHGPGSGRRARNWW 326 RT+ GPG GR +WW Sbjct: 138 RTKRGPGPGRSCGSWW 153
>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor| Length = 2193 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 6/28 (21%) Frame = +3 Query: 261 GLVAAARTRHGPGSGRRA------RNWW 326 GL AA RT GPG+GRRA R WW Sbjct: 40 GLRAAPRTP-GPGAGRRAAKLRPGRGWW 66
>Y4XL_RHISN (P55704) Hypothetical protein y4xL| Length = 338 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -2 Query: 313 ARRPEPGPCLVRAAATSPSGIGLLVRRPSHAWGKRRPGSKAACAGQAIQ*SSGVKA 146 A P+ GP V + + PS RPSHAW G++ A + SGV+A Sbjct: 227 AAGPQAGPWQVGPSHSGPSQA-----RPSHAWPSSSAGAEPAELSDFVM-DSGVRA 276
>GCH2_AZOBR (P43525) GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)| Length = 385 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%) Frame = +3 Query: 123 LLCFSRARALTPDD-YWIAWPAH------------AALDPGRRFPQACDGRRTRRPIPEG 263 ++ S R LT D+ + +A P H A+DPG R A D R R +P Sbjct: 94 VVALSLPRCLTADEAHALADPEHRPDGDMPDGLTATAMDPGSRETAAVDLARLARLLPAA 153 Query: 264 LVAAARTRHG 293 +VA A G Sbjct: 154 IVAPATDHTG 163
>RL1_DESVH (Q727D0) 50S ribosomal protein L1| Length = 235 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -2 Query: 304 PEPGPCLVRAAATSPSGIGLLVRRPSHAWGKRRPGSKAACAGQA 173 P+ +VR A T P+G+G VR G++ +KAA A A Sbjct: 52 PKYSDQMVRGAVTMPNGLGKTVRVAVFCKGEKEAEAKAAGADVA 95
>ATG22_MAGGR (Q51IZ9) Autophagy-related protein 22| Length = 679 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 307 RPEPGPCLVRAAATSPSGIGLLVRRPSHAW 218 RP PGP L A+ +S G+ V +AW Sbjct: 382 RPRPGPPLPAASESSRGGVAAFVSYTLYAW 411
>RL15_PIG (P79324) 60S ribosomal protein L15 (Fragment)| Length = 153 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +3 Query: 48 DRVSKQCRLLRGSVKSTS*WVGES---------ILLCFSRARALTPDDYWIAWPAHAALD 200 +R + C LR S WVGE ++ F +A PD WI P H Sbjct: 53 ERAGRHCGALR---VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK--- 106 Query: 201 PGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRARNWWCGSR 338 R R GL +A R G G G + + GSR Sbjct: 107 -----------HREMR----GLTSAGRKSRGLGKGHKFHHTIGGSR 137
>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 709 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%) Frame = +1 Query: 157 RMTTGSPGRRTLPWIPVAVSPKHATAGARGGRSPRG-----------WLPRLARDMGPV 300 R G PG + P +P +V PK + G+ G R P G LP + D GP+ Sbjct: 647 RGAAGEPGVQGPPGVPGSVGPK-GSGGSPGPRGPPGPMGPQGLRGEVGLPGIKGDKGPL 704
>WC11_BOVIN (P30205) Antigen WC1.1 precursor| Length = 1436 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = -3 Query: 318 SELGGRNRAHVSCEPRQPAPRGSASSCAGR---RMLGGNGD 205 S + A++SCE R+P +A++C R R+ GG+ + Sbjct: 1123 SSCSPKEEAYISCEGRRPKSCPTAAACTDREKLRLRGGDSE 1163
>ACVS_CEPAC (P25464) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine| synthase (EC 6.3.2.26) (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase) (ACV synthetase) (ACVS) Length = 3712 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 169 GSPGRRTLPWIPVAVSPKHATAGARGGRSPRGWLPRLARDMGPVPAAELG 318 G R LP + VAV+P H G RG + L + ++ VPA ++G Sbjct: 767 GKADLRALPAVEVAVAPTHKQDGERGNQLESD-LAAIWGNILSVPAQDIG 815
>RL15_RAT (P61314) 60S ribosomal protein L15| Length = 203 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +3 Query: 48 DRVSKQCRLLRGSVKSTS*WVGES---------ILLCFSRARALTPDDYWIAWPAHAALD 200 +R + C LR S WVGE ++ F +A PD WI P H Sbjct: 103 ERAGRHCGALR---VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK--- 156 Query: 201 PGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRARNWWCGSR 338 R R GL +A R G G G + + GSR Sbjct: 157 -----------HREMR----GLTSAGRKSRGLGKGHKFHHTIGGSR 187
>RL15_PONPY (Q5NVE0) 60S ribosomal protein L15| Length = 203 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +3 Query: 48 DRVSKQCRLLRGSVKSTS*WVGES---------ILLCFSRARALTPDDYWIAWPAHAALD 200 +R + C LR S WVGE ++ F +A PD WI P H Sbjct: 103 ERAGRHCGALR---VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK--- 156 Query: 201 PGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRARNWWCGSR 338 R R GL +A R G G G + + GSR Sbjct: 157 -----------HREMR----GLTSAGRKSRGLGKGHKFHHTIGGSR 187
>RL15_MOUSE (Q9CZM2) 60S ribosomal protein L15| Length = 203 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +3 Query: 48 DRVSKQCRLLRGSVKSTS*WVGES---------ILLCFSRARALTPDDYWIAWPAHAALD 200 +R + C LR S WVGE ++ F +A PD WI P H Sbjct: 103 ERAGRHCGALR---VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK--- 156 Query: 201 PGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRARNWWCGSR 338 R R GL +A R G G G + + GSR Sbjct: 157 -----------HREMR----GLTSAGRKSRGLGKGHKFHHTIGGSR 187
>RL15_HUMAN (P61313) 60S ribosomal protein L15| Length = 203 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 9/106 (8%) Frame = +3 Query: 48 DRVSKQCRLLRGSVKSTS*WVGES---------ILLCFSRARALTPDDYWIAWPAHAALD 200 +R + C LR S WVGE ++ F +A PD WI P H Sbjct: 103 ERAGRHCGALR---VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK--- 156 Query: 201 PGRRFPQACDGRRTRRPIPEGLVAAARTRHGPGSGRRARNWWCGSR 338 R R GL +A R G G G + + GSR Sbjct: 157 -----------HREMR----GLTSAGRKSRGLGKGHKFHHTIGGSR 187
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 220 WGKRRPGSKAACAGQAIQ*SSGVKARALLKHNNMLSPT 107 W R+PG+KAAC I+ S G+ + H+ L T Sbjct: 286 WDTRKPGNKAAC---TIKESRGINSLDFNPHSEFLVAT 320
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 298 PGPCLVRAAATSPSGIGLLVRRPSHAWGKRRPGSKAAC 185 PGP L+ A +P G G L+ S G +P A+C Sbjct: 10 PGPLLLGGPAGAPPGGGALLGLRSLLQGNSKPKEPASC 47
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 298 PGPCLVRAAATSPSGIGLLVRRPSHAWGKRRPGSKAAC 185 PGP L+ A +P G G L+ S G +P A+C Sbjct: 10 PGPLLLGGPAGAPPGGGALLGLRSLLQGNSKPKEPASC 47
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = +1 Query: 169 GSPGRRTLPWIPVAVSPKHATAGARGGRSPRGWLPRLARDMGPVPA 306 G PG +P +P P HA AG G R P G R P PA Sbjct: 613 GMPGPPGIPGLPGI--PGHALAGKDGERGPPGVPGDAGRPGSPGPA 656
>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2| Length = 2061 Score = 27.3 bits (59), Expect = 9.6 Identities = 21/68 (30%), Positives = 28/68 (41%) Frame = +3 Query: 108 VGESILLCFSRARALTPDDYWIAWPAHAALDPGRRFPQACDGRRTRRPIPEGLVAAARTR 287 +G S + + LT D WIA+P H G++ P A R IP G + Sbjct: 230 LGHSGAVSEEEQQQLTAD--WIAYPLHKLQSLGKQPPPAQPPE--RMSIPSGYAVPSALS 285 Query: 288 HGPGSGRR 311 H P RR Sbjct: 286 HTPLCQRR 293
>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)| Length = 617 Score = 27.3 bits (59), Expect = 9.6 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 7/97 (7%) Frame = -2 Query: 328 HHQFRA-------RRPEPGPCLVRAAATSPSGIGLLVRRPSHAWGKRRPGSKAACAGQAI 170 HH+ R R PEPGP L R L+R+PS G+ Sbjct: 69 HHRARPGGRGRCLRAPEPGPALARLEGRE---FEFLMRQPSVTIGRN------------- 112 Query: 169 Q*SSGVKARALLKHNNMLSPTH*EVLFTEPRNNLHCL 59 SS + ++ +S H ++ F EP L CL Sbjct: 113 --SSQGSVDLSMGLSSFISRRHLQLSFQEPHFYLRCL 147
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 154 RRMTTGSPGRRTLPWIPVAVSPKHATAGARG-GRSPRGWLPRLARDMGPVPAAELG 318 +R P RT P P+ + GARG GR+ LPR + G P AE G Sbjct: 880 QRKVPEKPEVRTAPGAPMLPRQMY---GARGKGRTQLSLLPRALQRQGAAPQAENG 932
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%) Frame = +1 Query: 157 RMTTGSPGRRTLPWIPVAVSPKHATAGARGGRSPRG-----------WLPRLARDMGPV 300 R G PG P +P +V PK ++G+ G + P G LP + D GPV Sbjct: 646 RGAAGEPGPHGPPGVPGSVGPK-GSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPV 703 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,209,822 Number of Sequences: 219361 Number of extensions: 1130512 Number of successful extensions: 3755 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3749 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
