Clone Name | rbart51e03 |
---|---|
Clone Library Name | barley_pub |
>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG island, complete sequence Length = 191652 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3 aaaatttcattgcattaccaat 24 |||||||||||||||||||||| Sbjct: 188953 aaaatttcattgcattaccaat 188932
>ref|XM_464133.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1230 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ggccggcgcacgaggaggccg 251 ||||||||||||||||||||| Sbjct: 363 ggccggcgcacgaggaggccg 383
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ggccggcgcacgaggaggccg 251 ||||||||||||||||||||| Sbjct: 2429701 ggccggcgcacgaggaggccg 2429721
>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0064G16 Length = 166453 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ggccggcgcacgaggaggccg 251 ||||||||||||||||||||| Sbjct: 45622 ggccggcgcacgaggaggccg 45642
>gb|AF090145.1|AF090145 Nasonia vitripennis R2 non-LTR retrotransposable element reverse transcriptase gene, partial cds Length = 5028 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 tccggccgccgagctcggaat 320 ||||||||||||||||||||| Sbjct: 850 tccggccgccgagctcggaat 870
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 ggatcgcctggccggcgcacg 189 ||||||||||||||||||||| Sbjct: 2840883 ggatcgcctggccggcgcacg 2840903
>emb|AL355390.4| Human DNA sequence from clone RP11-512C24 on chromosome 13 Contains a 60S ribosomal protein 21 (RPL21) pseudogene and a novel gene, complete sequence Length = 158951 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aatcaaaagattcagcgtag 41 |||||||||||||||||||| Sbjct: 124195 aatcaaaagattcagcgtag 124214
>emb|AL159172.16| Human DNA sequence from clone RP11-554F11 on chromosome 10 Contains part of the TAF3 gene for TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa (TAF140,TAFII140), complete sequence Length = 43958 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aaagcatattattatgcttt 134 |||||||||||||||||||| Sbjct: 41838 aaagcatattattatgcttt 41857
>emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, complete sequence Length = 156637 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcatattattatgctttagc 137 |||||||||||||||||||| Sbjct: 128836 gcatattattatgctttagc 128855
>emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 in linkage group 8, complete sequence Length = 231254 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcatattattatgctttagc 137 |||||||||||||||||||| Sbjct: 60763 gcatattattatgctttagc 60782
>gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the complete genome Length = 12797 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cccggttccggccgccgagc 313 |||||||||||||||||||| Sbjct: 6791 cccggttccggccgccgagc 6810
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gacgccggatgactactgga 171 |||||||||||||||||||| Sbjct: 3220698 gacgccggatgactactgga 3220679
>gb|DQ084247.1| Uncultured bacterium BAC10-4, complete fosmid sequence Length = 39827 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tggccggcgcacgctgcctt 196 |||||||||||||||||||| Sbjct: 17590 tggccggcgcacgctgcctt 17571 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,490,341 Number of Sequences: 3902068 Number of extensions: 2490341 Number of successful extensions: 40843 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40730 Number of HSP's gapped (non-prelim): 113 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)