ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on ch... 44 0.29
2ref|XM_464133.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
4dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5gb|AF090145.1|AF090145 Nasonia vitripennis R2 non-LTR retrotrans... 42 1.1
6emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.1
7emb|AL355390.4| Human DNA sequence from clone RP11-512C24 on chr... 40 4.5
8emb|AL159172.16| Human DNA sequence from clone RP11-554F11 on ch... 40 4.5
9emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, comp... 40 4.5
10emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 i... 40 4.5
11gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the... 40 4.5
12gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.5
13gb|DQ084247.1| Uncultured bacterium BAC10-4, complete fosmid seq... 40 4.5

>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the
              SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG
              island, complete sequence
          Length = 191652

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 3      aaaatttcattgcattaccaat 24
              ||||||||||||||||||||||
Sbjct: 188953 aaaatttcattgcattaccaat 188932



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>ref|XM_464133.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 ggccggcgcacgaggaggccg 251
           |||||||||||||||||||||
Sbjct: 363 ggccggcgcacgaggaggccg 383



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 231     ggccggcgcacgaggaggccg 251
               |||||||||||||||||||||
Sbjct: 2429701 ggccggcgcacgaggaggccg 2429721



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>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0064G16
          Length = 166453

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   ggccggcgcacgaggaggccg 251
             |||||||||||||||||||||
Sbjct: 45622 ggccggcgcacgaggaggccg 45642



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>gb|AF090145.1|AF090145 Nasonia vitripennis R2 non-LTR retrotransposable element reverse
           transcriptase gene, partial cds
          Length = 5028

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 300 tccggccgccgagctcggaat 320
           |||||||||||||||||||||
Sbjct: 850 tccggccgccgagctcggaat 870



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 169     ggatcgcctggccggcgcacg 189
               |||||||||||||||||||||
Sbjct: 2840883 ggatcgcctggccggcgcacg 2840903



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>emb|AL355390.4| Human DNA sequence from clone RP11-512C24 on chromosome 13 Contains a 60S
              ribosomal protein 21 (RPL21) pseudogene and a novel gene,
              complete sequence
          Length = 158951

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     aatcaaaagattcagcgtag 41
              ||||||||||||||||||||
Sbjct: 124195 aatcaaaagattcagcgtag 124214



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>emb|AL159172.16| Human DNA sequence from clone RP11-554F11 on chromosome 10 Contains
             part of the TAF3 gene for TAF3 RNA polymerase II, TATA box
             binding protein (TBP)-associated factor, 140kDa
             (TAF140,TAFII140), complete sequence
          Length = 43958

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aaagcatattattatgcttt 134
             ||||||||||||||||||||
Sbjct: 41838 aaagcatattattatgcttt 41857



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>emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, complete sequence
          Length = 156637

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    gcatattattatgctttagc 137
              ||||||||||||||||||||
Sbjct: 128836 gcatattattatgctttagc 128855



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>emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 in linkage group 8,
             complete sequence
          Length = 231254

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gcatattattatgctttagc 137
             ||||||||||||||||||||
Sbjct: 60763 gcatattattatgctttagc 60782



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>gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the complete genome
          Length = 12797

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  cccggttccggccgccgagc 313
            ||||||||||||||||||||
Sbjct: 6791 cccggttccggccgccgagc 6810



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 152     gacgccggatgactactgga 171
               ||||||||||||||||||||
Sbjct: 3220698 gacgccggatgactactgga 3220679



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>gb|DQ084247.1| Uncultured bacterium BAC10-4, complete fosmid sequence
          Length = 39827

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tggccggcgcacgctgcctt 196
             ||||||||||||||||||||
Sbjct: 17590 tggccggcgcacgctgcctt 17571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,490,341
Number of Sequences: 3902068
Number of extensions: 2490341
Number of successful extensions: 40843
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40730
Number of HSP's gapped (non-prelim): 113
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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