ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_MACIN (Q52ZT5) Maturase K (Intron maturase) 30 1.2
2KGUA_HAEDU (Q7VKP3) Guanylate kinase (EC 2.7.4.8) (GMP kinase) 30 2.0
3CAPS1_XENLA (Q6GLR7) Calcium-dependent secretion activator 1 (Ca... 28 7.5
4MATK_BANCU (Q52ZX4) Maturase K (Intron maturase) 28 7.5
5CAPS1_RAT (Q62717) Calcium-dependent secretion activator 1 (Calc... 27 9.8
6CAPS1_MOUSE (Q80TJ1) Calcium-dependent secretion activator 1 (Ca... 27 9.8
7CAPS1_HUMAN (Q9ULU8) Calcium-dependent secretion activator 1 (Ca... 27 9.8
8HIPK3_RAT (O88850) Homeodomain-interacting protein kinase 3 (EC ... 27 9.8

>MATK_MACIN (Q52ZT5) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 174 HTKRTSILSLVQRFHIYKTKQHLAVLVH 257
           H + TS  +L++R H Y  ++HL VL H
Sbjct: 236 HLRSTSFGALLERTHFYGKREHLVVLFH 263



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>KGUA_HAEDU (Q7VKP3) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 206

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 132 LANIPQTKVVLNLVHTKRTSILSLVQRFHIYKTKQH 239
           LA++P+T+V L++ HT R   +      H Y T+ H
Sbjct: 24  LADLPRTEVQLSISHTTRQPRVGETHGIHYYFTEHH 59



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>CAPS1_XENLA (Q6GLR7) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1)
          Length = 1299

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 LWYVGETLWMNYVKKYHMLTIVLWYNYA 66
           LW +G+ +W  + K++ +L  V  Y +A
Sbjct: 495 LWVIGKNVWKRWKKRFFVLVQVSQYTFA 522



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>MATK_BANCU (Q52ZX4) Maturase K (Intron maturase)|
          Length = 509

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 174 HTKRTSILSLVQRFHIYKTKQHLAVL 251
           H + TS  +L++R H Y  ++HL VL
Sbjct: 236 HLRSTSFGALLERTHFYGKREHLVVL 261



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>CAPS1_RAT (Q62717) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1) (rCAPS)
          Length = 1289

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 LWYVGETLWMNYVKKYHMLTIVLWYNYA 66
           LW +G+ +W  + K++ +L  V  Y +A
Sbjct: 526 LWTIGKNVWKRWKKRFFVLVQVSQYTFA 553



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>CAPS1_MOUSE (Q80TJ1) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1)
          Length = 1355

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 LWYVGETLWMNYVKKYHMLTIVLWYNYA 66
           LW +G+ +W  + K++ +L  V  Y +A
Sbjct: 526 LWTIGKNVWKRWKKRFFVLVQVSQYTFA 553



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>CAPS1_HUMAN (Q9ULU8) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1)
          Length = 1353

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 LWYVGETLWMNYVKKYHMLTIVLWYNYA 66
           LW +G+ +W  + K++ +L  V  Y +A
Sbjct: 528 LWAIGKNVWKRWKKRFFVLVQVSQYTFA 555



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>HIPK3_RAT (O88850) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)|
           (Androgen receptor-interacting nuclear protein kinase)
           (ANPK)
          Length = 1191

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 113 HSSSIKSRQHTTN*GST*PSSYQKNFHSKLSSTLPYIQNQT 235
           HSS +KS  H  +   + PSS + N HSK+S   P   N T
Sbjct: 535 HSSHVKSCFHIMDICKS-PSSCETNNHSKMSLLRPVASNGT 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,128,061
Number of Sequences: 219361
Number of extensions: 750613
Number of successful extensions: 1333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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