>YCX7_CHLVU (O20159) Hypothetical 79.7 kDa protein in psaB-ycf62 intergenic|
           region (ORF695)
          Length = 695

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +1

Query: 7   RAHIILQFT------RQSDNEQNPQSIQDTSSSR*RIETVEVHIHIITLQHVDMTLFCIY 168
           RA + +QF       R+ +NE    S+Q T+S          H++++ L+    ++ C+Y
Sbjct: 456 RAFLEIQFAHLFGAARRGENEPEDSSVQGTNS----------HLNLVYLETFSHSISCLY 505

Query: 169 GMGG 180
            MGG
Sbjct: 506 EMGG 509

>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange|
            protein 1) (KAR(-)-enhancing mutation protein) (5'-3'
            exoribonuclease) (DNA strand transfer protein beta)
            (STP-beta) (p175)
          Length = 1528

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 1    RERAHIILQFTRQSDNEQNPQSIQDTS 81
            +ERAH +L F ++  NE+N +S+ + S
Sbjct: 1281 KERAHDLLNFIKKDTNEKNSESVDNKS 1307

>IF2_DESVH (Q72ER1) Translation initiation factor IF-2|
          Length = 1079

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 247 GTPHSLLRRWHHDDDRAPVEARVGNPAAQLTTLLAE 354
           G P  ++RR H D DRA   A    P  + T  + E
Sbjct: 64  GNPDVIVRRRHRDGDRASARAEAKAPEQEATAAMPE 99

>HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 145 DMTLFCI-YGMGGEKIQDNTTSRRTRAGTSWTS 240
           D+ L C+ YG+  EK++    ++R R G SW+S
Sbjct: 60  DIALLCLRYGLQMEKVKTWFMAQRLRCGISWSS 92

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 193 DNTTSRRTRAGTSWTSSHGTPHSL-LRRWHHDDDRAPVEARVGNPAAQLTTLLAERARVA 369
           D    RR R     + + GTP    +R         P   RVG+P    T   A+RAR A
Sbjct: 726 DPPPPRRARRSQRHSDARGTPPPAPVRDPPRPQPSPPAPPRVGDPVPPTTAEPADRARHA 785

Query: 370 EV 375
           E+
Sbjct: 786 EL 787

>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger|
            protein 53)
          Length = 1863

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 286  DDRAPVEARVGNPAAQLTTLLAERARVAE 372
            +DRAP  ARVGN  +  + L   + +VAE
Sbjct: 1581 EDRAPESARVGNIPSSTSALKVPQLKVAE 1609

>SYA_AQUPY (Q9XDM3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 871

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 101 KQLRFTFT*SHYNMLT*HYSVFTEWEVKRSKTTQHQGAQEQVRAGPVHMARPIVCSVGGI 280
           K LRF FT         H+S  TE E+KR +   ++  +E +    + MA       G I
Sbjct: 587 KYLRFDFT---------HFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQEALQTGAI 637

Query: 281 MTTTER 298
               E+
Sbjct: 638 AIFEEK 643

>HYAL2_MOUSE (O35632) Hyaluronidase-2 precursor (EC 3.2.1.35) (Hyal-2)|
           (Hyaluronoglucosaminidase-2) (LUCA-2)
          Length = 473

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 160 CIYGMGGEKIQDNTTSRRTRAGTSWTSSHGT 252
           C  G GGE+ Q N       A  +W  SH T
Sbjct: 429 CYLGWGGEQCQRNYKGAAGNASRAWAGSHLT 459

>CP2CN_RAT (P24470) Cytochrome P450 2C23 (EC 1.14.14.1) (CYPIIC23)|
           (Arachidonic acid epoxygenase)
          Length = 494

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 234 PARTCSCAP*CCVVLDLFTSHSVNTE*CHVNML*CDYVNVNLNCFYSLPTAACVLYGLWI 55
           P    +CAP   +   LF       +   +N++  D +N N   F  + +  C +Y LW 
Sbjct: 170 PTFILACAPCNVICSILFNDRFQYNDKTFLNLM--DLLNKN---FQQVNSVWCQMYNLWP 224

Query: 54  LLIV*LPGE 28
            +I  LPG+
Sbjct: 225 TIIKYLPGK 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,656,718
Number of Sequences: 219361
Number of extensions: 1062862
Number of successful extensions: 3133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3129
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)