>L_MABVP (P35262) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 126 AFMYDARVHLLPRHQVCFCKRLFIFPYFLTWIHYLLPNCF 7
           AF Y+       RH + +C R +       W+H+L+P C+
Sbjct: 642 AFRYE-----FTRHFIDYCNRCYGVKNLFDWMHFLIPLCY 676

>L_MABVM (P31352) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 126 AFMYDARVHLLPRHQVCFCKRLFIFPYFLTWIHYLLPNCF 7
           AF Y+       RH + +C R +       W+H+L+P C+
Sbjct: 642 AFRYE-----FTRHFIDYCNRCYGVKNLFDWMHFLIPLCY 676

>MVIN_RHITR (O05467) Virulence factor mviN homolog|
          Length = 533

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -2

Query: 97  AAQAP---SLFL*TALHFSLFFNMDPLSVAQLLSW 2
           AA AP   +L + +AL ++++F  DPL+ A  LSW
Sbjct: 161 AAVAPIFLNLVMISALFYAIYFGADPLTTAWYLSW 195

>1A43_HUMAN (P30456) HLA class I histocompatibility antigen, A-43 alpha chain|
           precursor (MHC class I antigen A*43) (Aw-43)
          Length = 365

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 138 IKSKNDQAHLQIERSNCKSARPLHNLSRTIATMIERMY 251
           ++++N +AH Q +R+N  + R  +N S   +  I+RMY
Sbjct: 86  LQTRNVKAHSQTDRANLGTLRGYYNQSEDGSHTIQRMY 123

>FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precursor (EC 1.2.1.2)|
           (FDH alpha subunit) (Formate dehydrogenase large
           subunit)
          Length = 1012

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 296 YTDK--HGSVSIEGESPVHPFNHGGYCAR*VM*W 201
           +TDK  + ++++EG+ P HP N G  CA+    W
Sbjct: 64  HTDKKTNRAINVEGD-PDHPINEGSLCAKGASTW 96

>1A26_HUMAN (P30450) HLA class I histocompatibility antigen, A-26 alpha chain|
           precursor (MHC class I antigen A*26)
          Length = 365

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 144 SKNDQAHLQIERSNCKSARPLHNLSRTIATMIERMY 251
           ++N +AH Q +R+N  + R  +N S   +  I+RMY
Sbjct: 88  TRNVKAHSQTDRANLGTLRGYYNQSEDGSHTIQRMY 123

>FLP_STAAU (Q9KJ74) Protein flp (FmtA-like protein)|
          Length = 498

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 30  GSMLKNKEK*RAVYKNKLGAWAANVHVHHT*KHQRRIKSKNDQAHLQIERSNCKSARPLH 209
           G +++N  K ++  K    +W   +H+ HT   Q   KSK+D    +++ S    ++P  
Sbjct: 199 GLIIQNVTK-QSYTKYITNSWLKPLHMTHTSFKQTNYKSKHDAIGYELQGSTPVVSKPEF 257

Query: 210 NL 215
           NL
Sbjct: 258 NL 259

>FLP_STAAC (Q5HDB2) Protein flp (FmtA-like protein)|
          Length = 498

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 30  GSMLKNKEK*RAVYKNKLGAWAANVHVHHT*KHQRRIKSKNDQAHLQIERSNCKSARPLH 209
           G +++N  K ++  K    +W   +H+ HT   Q   KSK+D    +++ S    ++P  
Sbjct: 199 GLIIQNVTK-QSYTKYITNSWLKPLHMTHTSFKQTNYKSKHDAIGYELQGSTPVVSKPEF 257

Query: 210 NL 215
           NL
Sbjct: 258 NL 259

>SYYM_DROME (Q9W107) Probable tyrosyl-tRNA synthetase, mitochondrial precursor|
           (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS)
          Length = 464

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 168 EDEPDRSWTLFSFGAFMYDARVHLLPRHQVCF 73
           E E   S+T F++  F     +HLL RH  CF
Sbjct: 197 ESEDGMSFTEFTYQIFQAYDWLHLLRRHNCCF 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,972,888
Number of Sequences: 219361
Number of extensions: 919948
Number of successful extensions: 2004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)