>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 40     taaaaaataaggaaaaatgaagagc 64
              |||||||||||||||||||||||||
Sbjct: 186289 taaaaaataaggaaaaatgaagagc 186313

>gb|AC153007.4| Mus musculus BAC clone RP24-266E2 from chromosome 8, complete sequence
          Length = 174101

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 67    tttacaaaaacaaacttggtgcc 89
             |||||||||||||||||||||||
Sbjct: 81888 tttacaaaaacaaacttggtgcc 81910

>gb|AC124485.3| Mus musculus BAC clone RP23-450J12 from chromosome 8, complete sequence
          Length = 198254

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 67    tttacaaaaacaaacttggtgcc 89
             |||||||||||||||||||||||
Sbjct: 63856 tttacaaaaacaaacttggtgcc 63878

>emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chromosome X Contains part
              of the SH3KBP1 gene for SH3-domain kinase binding protein 1
              (CIN85), complete sequence
          Length = 190325

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 53     aaaatgaagagccgtttacaaaaac 77
              ||||||| |||||||||||||||||
Sbjct: 126634 aaaatgaggagccgtttacaaaaac 126658

>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence
          Length = 180483

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    ccaccatgattgaaaggatgt 249
              |||||||||||||||||||||
Sbjct: 157872 ccaccatgattgaaaggatgt 157852

>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence
          Length = 165675

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   ccaccatgattgaaaggatgt 249
             |||||||||||||||||||||
Sbjct: 32358 ccaccatgattgaaaggatgt 32338

>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence
          Length = 139939

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   ccaccatgattgaaaggatgt 249
             |||||||||||||||||||||
Sbjct: 37593 ccaccatgattgaaaggatgt 37613

>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ttaaaaaataaggaaaaatga 59
              |||||||||||||||||||||
Sbjct: 340683 ttaaaaaataaggaaaaatga 340663

>emb|BX005423.9| Zebrafish DNA sequence from clone DKEY-243E1 in linkage group 8,
             complete sequence
          Length = 68421

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    gagccgtttacaaaaacaaac 81
             |||||||||||||||||||||
Sbjct: 41860 gagccgtttacaaaaacaaac 41880

>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE
          Length = 210117

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     tgttaaaaaataaggaaaaat 57
              |||||||||||||||||||||
Sbjct: 157008 tgttaaaaaataaggaaaaat 157028

>gb|L43549.1|BUHTPIA Buchnera aphidicola aspartyl-tRNA synthetase (aspS), thioredoxin
             reductase (trxB), seryl-tRNA synthase (serS),
             phosphoserine aminotransferase (serC),
             3-enolpyruvylshikimate-5-phosphate synthetase (aroA),
             ribosomal protein S1 (rpsA), integration host factor beta
             subunit (himD), and triosephosphate isomerase (tpiA)
             genes, complete cds
          Length = 11479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    ttaaaaaataaggaaaaatga 59
             |||||||||||||||||||||
Sbjct: 11384 ttaaaaaataaggaaaaatga 11404

>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aaataaggaaaaatgaagag 63
              ||||||||||||||||||||
Sbjct: 516023 aaataaggaaaaatgaagag 516004

>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete
             sequence
          Length = 206103

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tataattcattatatatgct 312
             ||||||||||||||||||||
Sbjct: 92278 tataattcattatatatgct 92297

>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
             sequence
          Length = 237142

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    ttaaaaaataaggaaaaatgaaga 62
             ||||||||||||| ||||||||||
Sbjct: 25286 ttaaaaaataaggcaaaatgaaga 25309

>gb|AC133681.2| Homo sapiens 3 BAC RP11-88I21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114998

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aaaaaataaggaaaaatgaa 60
             ||||||||||||||||||||
Sbjct: 82074 aaaaaataaggaaaaatgaa 82055

>emb|AL672061.2| Human DNA sequence from clone RP11-101C11 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 91448

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  tgtataattcattatatatg 310
            ||||||||||||||||||||
Sbjct: 2084 tgtataattcattatatatg 2103

>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two
             novel genes and three putative novel pseudogenes, complete
             sequence
          Length = 189319

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    catgttaaaaaataaggaaa 54
             ||||||||||||||||||||
Sbjct: 65972 catgttaaaaaataaggaaa 65991

>gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138312

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttaaaaaataaggaaaaatg 58
              ||||||||||||||||||||
Sbjct: 115629 ttaaaaaataaggaaaaatg 115648

>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete
             sequence
          Length = 183714

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tataattcattatatatgct 312
             ||||||||||||||||||||
Sbjct: 48623 tataattcattatatatgct 48642

>gb|AC151458.27| Medicago truncatula clone mth2-105a19, complete sequence
          Length = 109617

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    tgttaaaaaataaggaaaaa 56
             ||||||||||||||||||||
Sbjct: 31724 tgttaaaaaataaggaaaaa 31743

>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
             complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ttaaaaaataaggaaaaatg 58
             ||||||||||||||||||||
Sbjct: 40791 ttaaaaaataaggaaaaatg 40810

>gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, complete sequence
          Length = 101894

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ttaaaaaataaggaaaaatg 58
            ||||||||||||||||||||
Sbjct: 3077 ttaaaaaataaggaaaaatg 3058

>gb|AC093166.6| Homo sapiens BAC clone RP11-1429F20 from 2, complete sequence
          Length = 213865

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tataattcattatatatgct 312
              ||||||||||||||||||||
Sbjct: 118973 tataattcattatatatgct 118992

>gb|AC093531.2| Homo sapiens chromosome 5 clone RP11-405L7, complete sequence
          Length = 163803

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ttaaaaaataaggaaaaatg 58
              ||||||||||||||||||||
Sbjct: 146693 ttaaaaaataaggaaaaatg 146674

>gb|AC083899.6| Homo sapiens BAC clone RP11-223J6 from 2, complete sequence
          Length = 153666

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   tataattcattatatatgct 312
             ||||||||||||||||||||
Sbjct: 21889 tataattcattatatatgct 21870

>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1,
             complete sequence
          Length = 97165

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   gccatgtttgtctgtataat 298
             ||||||||||||||||||||
Sbjct: 33275 gccatgtttgtctgtataat 33256

>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aaaataaggaaaaatgaaga 62
              ||||||||||||||||||||
Sbjct: 133559 aaaataaggaaaaatgaaga 133578

>emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chromosome 4, complete
              sequence
          Length = 264321

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    aggagaataaagtccaagaa 151
              ||||||||||||||||||||
Sbjct: 112692 aggagaataaagtccaagaa 112673

>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete
             sequence
          Length = 208396

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gttaaaaaataaggaaaaat 57
             ||||||||||||||||||||
Sbjct: 92409 gttaaaaaataaggaaaaat 92428

>gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139300

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaaaaataaggaaaaatgaa 60
             ||||||||||||||||||||
Sbjct: 12483 aaaaaataaggaaaaatgaa 12502

>emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chromosome 2, complete
             sequence
          Length = 154433

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   gtgcatcatacatgaaagca 127
             ||||||||||||||||||||
Sbjct: 60355 gtgcatcatacatgaaagca 60336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,347,736
Number of Sequences: 3902068
Number of extensions: 4347736
Number of successful extensions: 91031
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90952
Number of HSP's gapped (non-prelim): 79
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)