ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart51d03 |
|---|---|
| Clone Library Name | barley_pub |
>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)| Length = 579 Score = 35.4 bits (80), Expect = 0.034 Identities = 25/72 (34%), Positives = 30/72 (41%) Frame = -1 Query: 366 RRRRRDRSYATEDGGVKCVHSSKPRSVQSSPVRPGSLFLLNQQSARHFSSPSSSLRITCS 187 RRR D S+ +P S SSP P + Q A FSSP SSL + S Sbjct: 5 RRRLSDSSFVANLPNGYMPDLQRPESSSSSPASPATERRHPQPLAASFSSPGSSLFSSFS 64 Query: 186 CQLPATPCNPQG 151 + TP P G Sbjct: 65 SAMKQTPQAPSG 76
>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)| Length = 579 Score = 35.0 bits (79), Expect = 0.044 Identities = 25/72 (34%), Positives = 30/72 (41%) Frame = -1 Query: 366 RRRRRDRSYATEDGGVKCVHSSKPRSVQSSPVRPGSLFLLNQQSARHFSSPSSSLRITCS 187 RRR D S+ +P S SSP P + Q A FSSP SSL + S Sbjct: 5 RRRLSDSSFVANLPNGYMPDLQRPESSSSSPASPATERRHPQPLAASFSSPGSSLFSSFS 64 Query: 186 CQLPATPCNPQG 151 + TP P G Sbjct: 65 SAMKQTPQAPTG 76
>APEX2_MOUSE (Q68G58) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) (APEX nuclease 2) Length = 516 Score = 30.8 bits (68), Expect = 0.84 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -1 Query: 315 CVHSSKPRSVQSSPVRPGSLFLLNQQSARHFSSPSSSLRITCSCQLPATP 166 C+HS++ R Q P R Q++ + PSSSL T +LP P Sbjct: 372 CMHSTRLRKSQGGPKR-------KQKNLMSYFQPSSSLSQTSGVELPTLP 414
>PCX1_FUGRU (Q98UF7) Pecanex-like protein 1 (Pecanex homolog)| Length = 1703 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Frame = -1 Query: 336 TEDGGVKCVHSSKPRSVQSSPVR--PGSLFLLNQQSA-RHFSSPSSSLRITCSCQLPATP 166 ++ GG+ C S +SVQS VR P +++Q S+ R+ SS SSLR + + P Sbjct: 1459 SDAGGLSCGTSQSSQSVQSGLVRHSPARASVVSQSSSYRYSSSRHSSLRTSTT---GLEP 1515 Query: 165 CNPQGN*SQN-QIIETDLQMQVHAT 94 C + + + T LQ+++ +T Sbjct: 1516 CRRSSTSQLSLRTLPTSLQLRLGST 1540
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.3 bits (64), Expect = 2.4 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 18/88 (20%) Frame = -1 Query: 366 RRRRRDRSYATEDGGVKCVHSS----------------KPRSVQSSPVRPGSLFLLNQQS 235 RR R + + AT G H S +P S++ SPV P + QS Sbjct: 296 RRARTESATATSPAGGAAKHGSSSFRVRASSDGEGTMSRPASMEGSPVSPSA---SRTQS 352 Query: 234 ARHFSSP--SSSLRITCSCQLPATPCNP 157 RH S L + S +PAT C+P Sbjct: 353 HRHRGSSRLHPPLNHSRSIPMPATRCSP 380
>FA53C_PONPY (Q5R815) Protein FAM53C| Length = 392 Score = 29.3 bits (64), Expect = 2.4 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Frame = -1 Query: 372 PWRRRR-----RDRSYATE----DGGVKCVHSSKPRSVQSS------PVRPGSLFLLNQQ 238 PWR R R RS + GVK H PR ++ S +P S L Q+ Sbjct: 259 PWRPRGLRNLPRSRSQPCDLDARKTGVKRRHEEDPRRLRPSLDFDKMNQKPYSGGLCLQE 318 Query: 237 SARHFSSPSSSLRITCSCQLPATPCNPQGN*SQ 139 +AR SS S + CS + C+P G SQ Sbjct: 319 TAREGSSISPPWFMACSPPPLSASCSPTGGSSQ 351
>FA53C_HUMAN (Q9NYF3) Protein FAM53C| Length = 392 Score = 29.3 bits (64), Expect = 2.4 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Frame = -1 Query: 372 PWRRRR-----RDRSYATE----DGGVKCVHSSKPRSVQSS------PVRPGSLFLLNQQ 238 PWR R R RS + GVK H PR ++ S +P S L Q+ Sbjct: 259 PWRPRGLRNLPRSRSQPCDLDARKTGVKRRHEEDPRRLRPSLDFDKMNQKPYSGGLCLQE 318 Query: 237 SARHFSSPSSSLRITCSCQLPATPCNPQGN*SQ 139 +AR SS S + CS + C+P G SQ Sbjct: 319 TAREGSSISPPWFMACSPPPLSASCSPTGGSSQ 351
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.3 bits (64), Expect = 2.4 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 18/88 (20%) Frame = -1 Query: 366 RRRRRDRSYATEDGGVKCVHSS----------------KPRSVQSSPVRPGSLFLLNQQS 235 RR R + + AT G H S +P S++ SPV P + QS Sbjct: 93 RRARTESATATSPAGGAAKHGSSSFRVRASSDGEGTMSRPASMEGSPVSPSA---SRTQS 149 Query: 234 ARHFSSP--SSSLRITCSCQLPATPCNP 157 RH S L + S +PAT C+P Sbjct: 150 HRHRGSSRLHPPLNHSRSIPMPATRCSP 177
>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)| Length = 580 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/67 (32%), Positives = 26/67 (38%) Frame = -1 Query: 366 RRRRRDRSYATEDGGVKCVHSSKPRSVQSSPVRPGSLFLLNQQSARHFSSPSSSLRITCS 187 RRR D S+ +P S SSP P Q A FSSP SSL + S Sbjct: 5 RRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLS 64 Query: 186 CQLPATP 166 + P Sbjct: 65 SAMKQAP 71
>LGR8_CANFA (Q5XM32) Relaxin receptor 2 (Leucine-rich repeat-containing| G-protein coupled receptor 8) (INSL3 receptor) Length = 737 Score = 24.3 bits (51), Expect(2) = 4.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 283 IQSSTSRQPLPSQSAVSTPFFFTLF 209 +Q+S R P+ + AV+ FFF +F Sbjct: 604 LQTSEVRNPIGREVAVANRFFFIVF 628 Score = 22.7 bits (47), Expect(2) = 4.1 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -2 Query: 122 PIFRCKCMQLFS*LVVIRIHAWLFIMWPPLN 30 P+F K + LF + I +W+ I + P+N Sbjct: 636 PVFVIKILSLFRVEIPGTITSWIVIFFLPVN 666
>ATP4A_XENLA (Q92126) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1030 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+R+ ++H Sbjct: 812 TILFIELCTDIFPSVSLAYERAESDIMH 839
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = -3 Query: 304 LETQVCPIQSSTSR---QPLPSQSAVSTPFFFTLFLFKN 197 L+ Q +SSTS PLPS S+ S+ F TL LFK+ Sbjct: 28 LQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKS 66
>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor| (Polygalacturonase-inhibiting protein) (Floral organ regulator 1) Length = 332 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 266 GRTGLDWTDLGFELCTHLTPPSSVAYDRSRRRL 364 G+ L W DL F+L + PP D S R+ Sbjct: 241 GKVDLSWNDLDFDLSKLVFPPELTYLDLSHNRI 273
>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s| chain) Length = 1798 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = -3 Query: 175 CHTV*STGKLVTKPNYRDRSSDASACNYLAS***YASMHGCSSCGRH 35 CH S+G+ PN + S D A N+ S HGC C H Sbjct: 1056 CHCDPSSGQCPCLPNVQGPSCDRCAPNFWN----LTSGHGCQPCACH 1098
>ATP4A_PIG (P19156) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1033 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 815 TILFIELCTDIFPSVSLAYEKAESDIMH 842
>ATP4A_CANFA (P50996) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1033 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 815 TILFIELCTDIFPSVSLAYEKAESDIMH 842
>ATP4A_RABIT (P27112) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1034 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 816 TILFIELCTDIFPSVSLAYEKAESDIMH 843
>ATP4A_HUMAN (P20648) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1034 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 816 TILFIELCTDIFPSVSLAYEKAESDIMH 843
>ATP4A_RAT (P09626) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1032 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 814 TILFIELCTDIFPSVSLAYEKAESDIMH 841
>ATP4A_MOUSE (Q64436) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)| (Proton pump) (Gastric H+/K+ ATPase alpha subunit) Length = 1032 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 287 TDLGFELCTHLTPPSSVAYDRSRRRLLH 370 T L ELCT + P S+AY+++ ++H Sbjct: 814 TILFIELCTDIFPSVSLAYEKAESDIMH 841 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,956,277 Number of Sequences: 219361 Number of extensions: 1020973 Number of successful extensions: 2772 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2772 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
