>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete sequence
          Length = 184079

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 336    catgcatgcatacatcatccatccat 361
              ||||||||||||||||||||||||||
Sbjct: 110423 catgcatgcatacatcatccatccat 110448

>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete
             sequence
          Length = 180189

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 336   catgcatgcatacatcatccatccat 361
             ||||||||||||||||||||||||||
Sbjct: 43556 catgcatgcatacatcatccatccat 43581

>gb|AC123805.4| Mus musculus BAC clone RP24-150A12 from chromosome 7, complete sequence
          Length = 160666

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   atgcatgcatacatcatccatccat 361
             |||||||||| ||||||||||||||
Sbjct: 38794 atgcatgcatccatcatccatccat 38770

>gb|AC144726.6| Medicago truncatula clone mth2-7k13, complete sequence
          Length = 138586

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    agagggctcagattcgccttt 34
             |||||||||||||||||||||
Sbjct: 55294 agagggctcagattcgccttt 55274

>emb|AL035552.9|HS162O13 Human DNA sequence from clone RP6-162O13 on chromosome Xq21.31-21.33
              Contains the 3' end of a novel gene (FLJ30678) and a novel
              pseudogene, complete sequence
          Length = 149731

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    ttctgtgagaatgaaaaggtt 173
              |||||||||||||||||||||
Sbjct: 108164 ttctgtgagaatgaaaaggtt 108184

>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176237

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 334   atcatgcatgcatacatcatccatccatcagtc 366
             ||||| ||| ||| |||||||||||||||||||
Sbjct: 72317 atcatccatccatccatcatccatccatcagtc 72285

>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 334     atcatgcatgcatacatcatccatccatcagtc 366
               ||||| ||| ||| |||||||||||||||||||
Sbjct: 1237818 atcatccatccatccatcatccatccatcagtc 1237786

>emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on chromosome 2, complete
              sequence
          Length = 209013

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 364    gtctcaggagctgctcatacc 384
              |||||||||||||||||||||
Sbjct: 199471 gtctcaggagctgctcatacc 199451

>ref|XM_641900.1| Dictyostelium discoideum hypothetical protein (DDB0190063), partial
            mRNA
          Length = 3099

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  atgaaaaggtttcaaaagaa 182
            ||||||||||||||||||||
Sbjct: 1745 atgaaaaggtttcaaaagaa 1764

>gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 map human ortholog p22.31,
              complete sequence
          Length = 218326

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    cttctgcaaatagggtcaaa 302
              ||||||||||||||||||||
Sbjct: 161962 cttctgcaaatagggtcaaa 161981

>gb|AC005296.2| Homo sapiens X BAC GS1-214D18 (Genome Systems Human BAC Library) complete
              sequence
          Length = 191503

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    cttctgcaaatagggtcaaa 302
              ||||||||||||||||||||
Sbjct: 127545 cttctgcaaatagggtcaaa 127526

>gb|AC126447.3| Mus musculus BAC clone RP23-352G19 from chromosome 5, complete sequence
          Length = 196904

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 336   catgcatgcatacat-catccatccatc 362
             ||||||||||||||| ||||||||||||
Sbjct: 25769 catgcatgcatacatgcatccatccatc 25796

>gb|AC128698.4| Mus musculus BAC clone RP24-127J4 from chromosome 9, complete
           sequence
          Length = 148461

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ccatcttctttcaccagatc 78
           ||||||||||||||||||||
Sbjct: 560 ccatcttctttcaccagatc 579

>gb|AC123934.2| Mus musculus BAC clone RP23-354D22 from chromosome 17, complete
             sequence
          Length = 207817

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   tccatccatcagtctcagga 372
             ||||||||||||||||||||
Sbjct: 34386 tccatccatcagtctcagga 34405

>gb|AC105304.24| Mus musculus strain C57BL/6J clone rp23-71k5 map 17, complete sequence
          Length = 229816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   tccatccatcagtctcagga 372
             ||||||||||||||||||||
Sbjct: 91592 tccatccatcagtctcagga 91573

>emb|AL513164.13| Human DNA sequence from clone RP11-400P17 on chromosome 6 Contains the
             5' part of a novel gene, the 5' part of the gene for
             KIAA0790 protein (KIAA0790) and a CpG island, complete
             sequence
          Length = 154288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ttgtgctgaacttctgcaaa 292
             ||||||||||||||||||||
Sbjct: 20295 ttgtgctgaacttctgcaaa 20314

>emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416N2 on chromosome 10 Contains the 3'
              end of the NEURL gene for neuralized-like (Drosophila), the
              3' end of the SH3MD1 gene for SH3 multiple domains 1 and
              seven CpG islands, complete sequence
          Length = 203262

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 340    catgcatacatcatccatccatca 363
              ||||||| ||||||||||||||||
Sbjct: 175330 catgcatccatcatccatccatca 175353

>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence
          Length = 232613

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    gagaatgaaaaggtttcaaaagaa 182
              ||||||||||||||||||| ||||
Sbjct: 108490 gagaatgaaaaggtttcaacagaa 108513

>dbj|AB108391.1| Phleum pratense DNA, SSR, microsatellite D01-D07
          Length = 586

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 106 ctggttatcactcaacagaatgaccatccaag 137
           ||||||||||||||  |||||||||| |||||
Sbjct: 506 ctggttatcactcataagaatgaccagccaag 475

>gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, complete sequence
          Length = 161498

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    gagaatgaaaaggtttcaaaagaa 182
              ||||||||||||||||||| ||||
Sbjct: 154794 gagaatgaaaaggtttcaacagaa 154817

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12088767 gaatgaaaaggtttcaaaag 12088748



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12083452 gaatgaaaaggtttcaaaag 12083433



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12077704 gaatgaaaaggtttcaaaag 12077685



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12061655 gaatgaaaaggtttcaaaag 12061636

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        gcattgagatttgagagggc 20
                ||||||||||||||||||||
Sbjct: 11485988 gcattgagatttgagagggc 11486007

>gb|AC133589.24| Mus musculus chromosome 1, clone RP24-475M18, complete sequence
          Length = 167647

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 336    catgcatgcatacat-catccatccatc 362
              ||||||||||||||| ||||||||||||
Sbjct: 110095 catgcatgcatacatgcatccatccatc 110068

>gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, complete sequence
          Length = 206852

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 337   atgcatgcatacat-catccatccatca 363
             |||||||||||||| |||||||||||||
Sbjct: 63026 atgcatgcatacatgcatccatccatca 63053

>gb|AF124051.1|AF124051 Fugu rubripes double stranded RNA adenosine deaminase RED2 gene,
             partial cds
          Length = 51000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 340   catgcatacatcatccatccatca 363
             ||||||| ||||||||||||||||
Sbjct: 50108 catgcatccatcatccatccatca 50085

>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0013F08
          Length = 166989

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gcattgagatttgagagggc 20
            ||||||||||||||||||||
Sbjct: 1995 gcattgagatttgagagggc 2014

>dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0591A03
          Length = 147043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gcattgagatttgagagggc 20
              ||||||||||||||||||||
Sbjct: 119676 gcattgagatttgagagggc 119695

>dbj|AK103726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138C12, full
            insert sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gcattgagatttgagagggc 20
            ||||||||||||||||||||
Sbjct: 1467 gcattgagatttgagagggc 1486

>emb|BX927333.11| Zebrafish DNA sequence from clone CH211-69C15 in linkage group 10,
             complete sequence
          Length = 146168

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   catacatcatccatccatca 363
             ||||||||||||||||||||
Sbjct: 57337 catacatcatccatccatca 57356

>gb|AC007590.1|AC007590 Homo sapiens BAC 161A6, complete sequence
          Length = 100364

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 337   atgcatgcatacat-catccatccatca 363
             |||||||||||||| |||||||||||||
Sbjct: 79445 atgcatgcatacatgcatccatccatca 79472

>dbj|AP006306.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-591J4, complete
              sequence
          Length = 211750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 337    atgcatgcatacat-catccatccatca 363
              |||||||||||||| |||||||||||||
Sbjct: 117796 atgcatgcatacatgcatccatccatca 117769

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12043137 gaatgaaaaggtttcaaaag 12043118



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12037822 gaatgaaaaggtttcaaaag 12037803



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12032074 gaatgaaaaggtttcaaaag 12032055



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gaatgaaaaggtttcaaaag 180
                ||||||||||||||||||||
Sbjct: 12016025 gaatgaaaaggtttcaaaag 12016006

>emb|AL732641.5|CNS08C9G Oryza sativa chromosome 12, . BAC OSJNBb0049G07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 92432

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gaatgaaaaggtttcaaaag 180
             ||||||||||||||||||||
Sbjct: 86152 gaatgaaaaggtttcaaaag 86171



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gaatgaaaaggtttcaaaag 180
             ||||||||||||||||||||
Sbjct: 70103 gaatgaaaaggtttcaaaag 70122



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gaatgaaaaggtttcaaaag 180
             ||||||||||||||||||||
Sbjct: 64355 gaatgaaaaggtttcaaaag 64374



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gaatgaaaaggtttcaaaag 180
             ||||||||||||||||||||
Sbjct: 59040 gaatgaaaaggtttcaaaag 59059

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     ctggcctcgaccgaccaaac 403
               ||||||||||||||||||||
Sbjct: 3778977 ctggcctcgaccgaccaaac 3778958

>dbj|AP000069.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 5/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 337   atgcatgcatacat-catccatccatca 363
             |||||||||||||| |||||||||||||
Sbjct: 92155 atgcatgcatacatgcatccatccatca 92182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,354,621
Number of Sequences: 3902068
Number of extensions: 4354621
Number of successful extensions: 85109
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 84850
Number of HSP's gapped (non-prelim): 283
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)