ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome... 40 0.95
2gb|AC150210.1| Pan troglodytes chromosome X clone RP43-051H11 ma... 40 0.95
3gb|AC147083.2| Mus musculus BAC clone RP23-349M16 from chromosom... 40 0.95
4gb|AC138115.4| Mus musculus BAC clone RP24-241G8 from chromosome... 40 0.95
5emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-9... 40 0.95
6emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in... 40 0.95
7dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 0.95
8emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-2... 40 0.95
9gb|AC123926.4| Mus musculus BAC clone RP24-326N11 from chromosom... 38 3.7
10emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in ... 38 3.7
11emb|AL137178.7| Human DNA sequence from clone RP11-120K22 on chr... 38 3.7
12emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in... 38 3.7
13emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 i... 38 3.7
14emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 ... 38 3.7
15emb|AL929115.9| Zebrafish DNA sequence from clone CH211-146M13 i... 38 3.7
16emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 ... 38 3.7
17emb|AL935158.7| Zebrafish DNA sequence from clone CH211-232G13, ... 38 3.7
18dbj|AB231865.1| Spisula solidissima gene for zinc finger protein... 38 3.7 
>gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome 18, complete sequence
          Length = 202991

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ttattattgaatataaagca 54
             ||||||||||||||||||||
Sbjct: 87369 ttattattgaatataaagca 87350
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>gb|AC150210.1| Pan troglodytes chromosome X clone RP43-051H11 map human ortholog p21.3,
              complete sequence
          Length = 188797

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     attgaatataaagcacacaacttc 63
              ||||||||||||| ||||||||||
Sbjct: 155433 attgaatataaaggacacaacttc 155456
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>gb|AC147083.2| Mus musculus BAC clone RP23-349M16 from chromosome 18, complete
            sequence
          Length = 211199

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   ttattattgaatataaagca 54
            ||||||||||||||||||||
Sbjct: 2275 ttattattgaatataaagca 2294
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>gb|AC138115.4| Mus musculus BAC clone RP24-241G8 from chromosome 18, complete sequence
          Length = 156931

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ttattattgaatataaagca 54
              ||||||||||||||||||||
Sbjct: 155305 ttattattgaatataaagca 155286
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>emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-90P16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167642

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    ttattattgaatataaagcacaca 58
             |||||||||||||||| |||||||
Sbjct: 12455 ttattattgaatataatgcacaca 12478
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>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10,
             complete sequence
          Length = 58467

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aaagcacacaacttcacgct 68
             ||||||||||||||||||||
Sbjct: 51788 aaagcacacaacttcacgct 51807
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      ctcggtttattattgaatat 48
               ||||||||||||||||||||
Sbjct: 4137256 ctcggtttattattgaatat 4137275
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>emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-214N1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145035

 Score = 40.1 bits (20), Expect = 0.95
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     ttattattgaatataaagcacaca 58
              |||||||||||||||| |||||||
Sbjct: 134396 ttattattgaatataatgcacaca 134419
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>gb|AC123926.4| Mus musculus BAC clone RP24-326N11 from chromosome 16, complete
             sequence
          Length = 148820

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    taaagcacacaacttcacg 66
             |||||||||||||||||||
Sbjct: 57042 taaagcacacaacttcacg 57024
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>emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in linkage group 3, complete
              sequence
          Length = 149895

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      ccaaacctccgcagaggtc 27
              |||||||||||||||||||
Sbjct: 130183 ccaaacctccgcagaggtc 130165
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>emb|AL137178.7| Human DNA sequence from clone RP11-120K22 on chromosome 6 Contains the
             5' end of the BMP5 gene for bone morphogenetic protein 5,
             complete sequence
          Length = 112659

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 33    gtttattattgaatataaagcac 55
             |||| ||||||||||||||||||
Sbjct: 27308 gtttgttattgaatataaagcac 27286
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>emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in linkage group 5,
             complete sequence
          Length = 19924

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caaacctccgcagaggtct 28
             |||||||||||||||||||
Sbjct: 10698 caaacctccgcagaggtct 10680
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>emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 in linkage group 14,
             complete sequence
          Length = 137288

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     ccaaacctccgcagaggtc 27
             |||||||||||||||||||
Sbjct: 75036 ccaaacctccgcagaggtc 75018
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>emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 in linkage group 3,
             complete sequence
          Length = 187734

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     ccaaacctccgcagaggtc 27
             |||||||||||||||||||
Sbjct: 97049 ccaaacctccgcagaggtc 97031
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>emb|AL929115.9| Zebrafish DNA sequence from clone CH211-146M13 in linkage group 7,
             complete sequence
          Length = 148315

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    tgaatataaagcacacaac 60
             |||||||||||||||||||
Sbjct: 13576 tgaatataaagcacacaac 13594
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>emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 in linkage group 5,
              complete sequence
          Length = 168421

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      ccaaacctccgcagaggtc 27
              |||||||||||||||||||
Sbjct: 148585 ccaaacctccgcagaggtc 148567
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>emb|AL935158.7| Zebrafish DNA sequence from clone CH211-232G13, complete sequence
          Length = 149973

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    ccaaacctccgcagaggtc 27
            |||||||||||||||||||
Sbjct: 5749 ccaaacctccgcagaggtc 5767
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>dbj|AB231865.1| Spisula solidissima gene for zinc finger protein Sso-Zic, complete
            cds
          Length = 209833

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 37   attattgaatataaagcacacaa 59
            |||||| ||||||||||||||||
Sbjct: 5541 attattaaatataaagcacacaa 5519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 791,519
Number of Sequences: 3902068
Number of extensions: 791519
Number of successful extensions: 53720
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53549
Number of HSP's gapped (non-prelim): 171
length of query: 88
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 67
effective length of database: 17,151,101,840
effective search space: 1149123823280
effective search space used: 1149123823280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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