Clone Name | rbart51c11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 418 bits (211), Expect = e-114 Identities = 211/211 (100%) Strand = Plus / Minus Query: 5 agctagccatacactaacaaatggattcgccaccaccaccaggaccaggtacgcacaacg 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 agctagccatacactaacaaatggattcgccaccaccaccaggaccaggtacgcacaacg 963 Query: 65 agctggagtgccctcgtagatagcaccgtagttgactacacgtagtttgtactccacaaa 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 962 agctggagtgccctcgtagatagcaccgtagttgactacacgtagtttgtactccacaaa 903 Query: 125 caaatacatcacgcgttcaagacaatcttgtcgcactgtccgacctcgtcggccgacttg 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 caaatacatcacgcgttcaagacaatcttgtcgcactgtccgacctcgtcggccgacttg 843 Query: 185 tcggcgccgtcgagcgggaagaagaaggggt 215 ||||||||||||||||||||||||||||||| Sbjct: 842 tcggcgccgtcgagcgggaagaagaaggggt 812
>ref|XM_475074.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 46.1 bits (23), Expect = 0.044 Identities = 26/27 (96%) Strand = Plus / Minus Query: 189 cgccgtcgagcgggaagaagaaggggt 215 |||||||||||||||||||||| |||| Sbjct: 754 cgccgtcgagcgggaagaagaatgggt 728
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.044 Identities = 26/27 (96%) Strand = Plus / Plus Query: 189 cgccgtcgagcgggaagaagaaggggt 215 |||||||||||||||||||||| |||| Sbjct: 659635 cgccgtcgagcgggaagaagaatgggt 659661
>dbj|AK108350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B11, full insert sequence Length = 1008 Score = 46.1 bits (23), Expect = 0.044 Identities = 26/27 (96%) Strand = Plus / Minus Query: 189 cgccgtcgagcgggaagaagaaggggt 215 |||||||||||||||||||||| |||| Sbjct: 793 cgccgtcgagcgggaagaagaatgggt 767
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 46.1 bits (23), Expect = 0.044 Identities = 26/27 (96%) Strand = Plus / Plus Query: 189 cgccgtcgagcgggaagaagaaggggt 215 |||||||||||||||||||||| |||| Sbjct: 4834 cgccgtcgagcgggaagaagaatgggt 4860
>gb|AY728087.1| Taricha granulosa ORL1-like opioid receptor mRNA, complete cds Length = 1120 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 cgccaccaccaccaggaccagg 53 |||||||||||||||||||||| Sbjct: 810 cgccaccaccaccaggaccagg 789
>ref|XM_528133.1| PREDICTED: Pan troglodytes similar to opioid receptor, kappa 1; Opiate receptor, kappa-1 (LOC472761), mRNA Length = 2559 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 cgccaccaccaccaggaccag 52 ||||||||||||||||||||| Sbjct: 2259 cgccaccaccaccaggaccag 2239
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccgtcgagcgggaagaagaag 211 ||||||||||||||||||||| Sbjct: 2617991 ccgtcgagcgggaagaagaag 2618011
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccgtcgagcgggaagaagaag 211 ||||||||||||||||||||| Sbjct: 3830329 ccgtcgagcgggaagaagaag 3830349
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccgtcgagcgggaagaagaag 211 ||||||||||||||||||||| Sbjct: 3570676 ccgtcgagcgggaagaagaag 3570696
>emb|AL954251.1| Pan troglodytes chromosome 22 clone PTB-044H21 map 22q22.3, complete sequence Length = 149587 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 atggattcgccaccaccacca 45 ||||||||||||||||||||| Sbjct: 91235 atggattcgccaccaccacca 91215
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 cgttcaagacaatcttgtcgc 158 ||||||||||||||||||||| Sbjct: 1884242 cgttcaagacaatcttgtcgc 1884262
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gtcgagcgggaagaagaaggg 213 ||||||||||||||||||||| Sbjct: 337203 gtcgagcgggaagaagaaggg 337183
>gb|U11053.1|HSU11053 Human kappa opioid receptor (hKOR) mRNA, complete cds Length = 1182 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 cgccaccaccaccaggaccag 52 ||||||||||||||||||||| Sbjct: 856 cgccaccaccaccaggaccag 836
>ref|NM_187099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 789 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cgccgtcgagcgggaagaag 208 |||||||||||||||||||| Sbjct: 265 cgccgtcgagcgggaagaag 246
>gb|BC099912.1| Homo sapiens opioid receptor, kappa 1, mRNA (cDNA clone MGC:104656 IMAGE:30531690), complete cds Length = 4943 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 1053 gccaccaccaccaggaccag 1034
>ref|NM_000912.3| Homo sapiens opioid receptor, kappa 1 (OPRK1), mRNA Length = 4959 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 1077 gccaccaccaccaggaccag 1058
>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence Length = 38779 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 19675 ccaccaccaccaggaccagg 19656
>emb|Y10124.2|TTNARZYWV Thermus thermophilus nar operon (narCGHIJK genes) Length = 10622 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 accaccaccaggaccaggta 55 |||||||||||||||||||| Sbjct: 7564 accaccaccaggaccaggta 7545
>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12 Length = 240050 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 cgccaccaccaccaggacca 51 |||||||||||||||||||| Sbjct: 126352 cgccaccaccaccaggacca 126371
>emb|BX323467.8| Zebrafish DNA sequence from clone DKEY-48N15, complete sequence Length = 116326 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ttgtactccacaaacaaata 130 |||||||||||||||||||| Sbjct: 107057 ttgtactccacaaacaaata 107076
>gb|AC009646.12| Homo sapiens chromosome 8, clone RP11-162D9, complete sequence Length = 183519 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 110957 gccaccaccaccaggaccag 110976
>gb|AF498922.1| Homo sapiens opioid receptor kappa (OPRK1) mRNA, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 842 gccaccaccaccaggaccag 823
>ref|NM_134474.4| Drosophila melanogaster CG32532-RA (CG32532), mRNA Length = 4422 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 1325 ccaccaccaccaggaccagg 1306
>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone BACR27L16, complete sequence Length = 182623 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 147511 ccaccaccaccaggaccagg 147530
>ref|NM_063535.1| Caenorhabditis elegans T24B8.4 (T24B8.4) mRNA, complete cds Length = 2745 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 286 ccaccaccaccaggaccagg 305
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gtcgagcgggaagaagaagg 212 |||||||||||||||||||| Sbjct: 13469827 gtcgagcgggaagaagaagg 13469808
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cgccgtcgagcgggaagaag 208 |||||||||||||||||||| Sbjct: 15383126 cgccgtcgagcgggaagaag 15383107
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gtcgagcgggaagaagaagg 212 |||||||||||||||||||| Sbjct: 19810707 gtcgagcgggaagaagaagg 19810726
>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone BACR10M08, complete sequence Length = 180213 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 85991 ccaccaccaccaggaccagg 86010
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gtcgagcgggaagaagaagg 212 |||||||||||||||||||| Sbjct: 33665 gtcgagcgggaagaagaagg 33684
>gb|AY168006.1| Homo sapiens DRG kappa 1 splice variant KOR 1A mRNA, complete cds, alternatively spliced Length = 1396 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 1036 gccaccaccaccaggaccag 1017
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cgccgtcgagcgggaagaag 208 |||||||||||||||||||| Sbjct: 90125 cgccgtcgagcgggaagaag 90106
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ctgtccgacctcgtcggccg 179 |||||||||||||||||||| Sbjct: 6086637 ctgtccgacctcgtcggccg 6086618
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtcggcgccgtcgagcggga 203 |||||||||||||||||||| Sbjct: 3192722 gtcggcgccgtcgagcggga 3192741
>emb|Y10904.1|CCMUOPI C.commersoni mRNA for mu opioid receptor Length = 1231 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cgccaccaccaccaggacca 51 |||||||||||||||||||| Sbjct: 888 cgccaccaccaccaggacca 869
>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete sequence Length = 346474 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ccaccaccaccaggaccagg 53 |||||||||||||||||||| Sbjct: 191757 ccaccaccaccaggaccagg 191776
>gb|U17298.1|HSU17298 Human kappa opioid receptor (hKOR) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 842 gccaccaccaccaggaccag 823
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gtcgagcgggaagaagaagg 212 |||||||||||||||||||| Sbjct: 13424101 gtcgagcgggaagaagaagg 13424082
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gtcgagcgggaagaagaagg 212 |||||||||||||||||||| Sbjct: 115412 gtcgagcgggaagaagaagg 115431
>gb|U04092.1|CPU04092 Cavia porcellus Hartley kappa opioid receptor mRNA, complete cds Length = 1733 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 1081 gccaccaccaccaggaccag 1062
>gb|L37362.1|HUMOPRK1B Homo sapiens (clone d2-115) kappa opioid receptor (OPRK1) mRNA, complete cds Length = 1604 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccaccaccaccaggaccag 52 |||||||||||||||||||| Sbjct: 1219 gccaccaccaccaggaccag 1200 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,968,870 Number of Sequences: 3902068 Number of extensions: 1968870 Number of successful extensions: 150746 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149613 Number of HSP's gapped (non-prelim): 1133 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)