ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart51c01 |
|---|---|
| Clone Library Name | barley_pub |
>NMT1_ARATH (Q9LTR9) Glycylpeptide N-tetradecanoyltransferase 1 (EC 2.3.1.97)| (Peptide N-myristoyltransferase 1) (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1) (Type I N-myristoyltransferase 1) Length = 434 Score = 31.6 bits (70), Expect = 0.47 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -2 Query: 300 SDFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNFCLVTNFLVYYCIPNPRRSEPL 121 +DF+ N + WLLP +DS+L++ P VT+F +Y +P+ P Sbjct: 300 TDFDENDVE--HWLLPREDVVDSYLVES--------PETHDVTDFCSFYTLPSTILGNPN 349 Query: 120 QTTLHA 103 TTL A Sbjct: 350 YTTLKA 355
>TOLB_ERWCT (Q6D7F2) Protein tolB precursor| Length = 430 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +3 Query: 159 TPKNWSLDRSLA*KNTQARHLSRGSYLYPLRMVTTTGHPRSGLLQNQTKI 308 TP W+ A Q + + GSYL ++V T+G+P + L QNQ K+ Sbjct: 87 TPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVDTSGNPGNVLAQNQFKV 136
>FABG_BUCAP (Q8K9J5) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) Length = 244 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Frame = +2 Query: 23 LIGFLNPRLFTEKTGNNSGLIVQHKPRACSVVCKGSDLR----GFGMQ*YTKKLVTRQKF 190 +IG+L R + + SGLI HK A V KG + GF TK L F Sbjct: 139 VIGYLGNRGQINYSASKSGLIGFHKSLALEVAQKGITVNIVSPGFIKTNLTKNL---NVF 195 Query: 191 GLEKYTSKAPFKR 229 +K+ SK P KR Sbjct: 196 QYKKHLSKIPMKR 208
>IBP5_XENLA (Q90WV8) Insulin-like growth factor-binding protein 5 precursor| (IGFBP-5) (IBP-5) (IGF-binding protein 5) (xIGFBP-5) Length = 265 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C +K Sbjct: 81 CLPEQGEEKPLHALLHGRGVCLNLK 105
>ZN580_MOUSE (Q9DB38) Zinc finger protein 580| Length = 172 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 297 QTKINPGEPQTLTGYRSPSCSRVLIS 374 Q + PGEP GY P C+RV S Sbjct: 78 QREATPGEPGPRKGYSCPECARVFAS 103
>IBP3_HUMAN (P17936) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLC 91 C P+P + PLQ L RGLC Sbjct: 94 CQPSPDEARPLQALLDGRGLC 114
>L_HRSVA (P28887) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2165 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2 Query: 290 SKSDQD*SWGASNLDGVSIPIMQQSPDIKMISST 391 SK ++ SW SN+ GV+ P + + DIK +ST Sbjct: 1203 SKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTST 1236
>RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 2) Length = 1137 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +3 Query: 126 AQISVGLECNNTPKNWSLDRSLA*KNTQARHLSRGSYLYPLRMVT 260 AQI+ GLE + NW++ R + + LSR SY+ L M+T Sbjct: 416 AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMT 460
>IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCT------IKPELFPVFSVN 49 C P P PLQ L RGLC ++P L P S N Sbjct: 96 CQPPPGDPRPLQALLDGRGLCANASAVGRLRPYLLPSASGN 136
>ECHM_RAT (P14604) Enoyl-CoA hydratase, mitochondrial precursor (EC 4.2.1.17)| (Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA hydratase 1) Length = 290 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2 Query: 47 LFTEKTGNNS--GLIVQHKPRACSVVCKG 127 + TEK G NS GLI ++P+A + +C G Sbjct: 36 IITEKKGKNSSVGLIQLNRPKALNALCNG 64
>ECHM_MOUSE (Q8BH95) Enoyl-CoA hydratase, mitochondrial precursor (EC 4.2.1.17)| (Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA hydratase 1) Length = 290 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2 Query: 47 LFTEKTGNNS--GLIVQHKPRACSVVCKG 127 + TEK G NS GLI ++P+A + +C G Sbjct: 36 IITEKKGKNSSVGLIQLNRPKALNALCNG 64
>EPIC_STAEP (P30196) Epidermin biosynthesis protein epiC| Length = 455 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 5 DGQCHHLIGFLNPRLFTEKTGNNSGLIVQHKPRACSVVCKGSD 133 +G C+ G +N L + K NN GLI K +++ K +D Sbjct: 310 NGWCYGDTGIMNTLLLSGKALNNEGLIKMSKNILINIIDKNND 352
>COX2_TRYCR (P98023) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 210 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = -2 Query: 297 DFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNF-----CLVTNFLVYY 154 DF ++ VD W + + I LL+ LL+YF NF C V F Y+ Sbjct: 52 DFVSSKFVDTYWFVIGVMFIMCLLLRLCLLLYFGCLNFVSFDLCKVVGFQWYW 104
>ZN580_HUMAN (Q9UK33) Zinc finger protein 580 (LDL-induced EC protein)| Length = 172 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 297 QTKINPGEPQTLTGYRSPSCSRVLIS 374 Q + PGEP GY P C+RV S Sbjct: 78 QREAPPGEPGPRKGYSCPECARVFAS 103
>IBP5_HUMAN (P24593) Insulin-like growth factor-binding protein 5 precursor| (IGFBP-5) (IBP-5) (IGF-binding protein 5) Length = 272 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C K Sbjct: 80 CLPRQDEEKPLHALLHGRGVCLNEK 104
>METE_BUCAI (P57142) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 758 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 185 KFGLEKYTSKAPFKRKLSISTAHGNNHWPSTI 280 K+ L+ ++SK P + LS+ +G N W S + Sbjct: 267 KYNLKNFSSKIPSEWMLSLGVINGRNIWRSDL 298
>IBP5_BOVIN (Q05717) Insulin-like growth factor-binding protein 5 (IGFBP-5)| (IBP-5) (IGF-binding protein 5) (Fragment) Length = 111 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C K Sbjct: 46 CLPRQDEEKPLHALLHGRGVCLNEK 70
>IBP5_RAT (P24594) Insulin-like growth factor-binding protein 5 precursor| (IGFBP-5) (IBP-5) (IGF-binding protein 5) Length = 271 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C K Sbjct: 79 CLPRQDEEKPLHALLHGRGVCLNEK 103
>IBP5_PIG (Q28985) Insulin-like growth factor-binding protein 5 precursor| (IGFBP-5) (IBP-5) (IGF-binding protein 5) Length = 271 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C K Sbjct: 79 CLPRQDEEKPLHALLHGRGVCLNEK 103
>IBP5_MOUSE (Q07079) Insulin-like growth factor-binding protein 5 precursor| (IGFBP-5) (IBP-5) (IGF-binding protein 5) Length = 271 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 153 CIPNPRRSEPLQTTLHARGLCCTIK 79 C+P +PL LH RG+C K Sbjct: 79 CLPRQDEEKPLHALLHGRGVCLNEK 103
>COX2_TRYBB (P04372) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 210 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = -2 Query: 297 DFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNF-----CLVTNFLVYY 154 DF ++ +D W + + I LL+ LL+YFS NF C V F Y+ Sbjct: 52 DFISSKFIDTYWFVLGMMFILCLLLRLCLLLYFSCINFVSFDLCKVIGFQWYW 104
>PLSX_STRMU (Q8DWL9) Fatty acid/phospholipid synthesis protein plsX| Length = 332 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +3 Query: 177 LDRSLA*KNTQARHLSRGSYL--YPLRMVTTTGHPRSGLLQNQTKINPGEP 323 LD +NT A HL + + L + + V HPR GLL N T+ G+P Sbjct: 138 LDLGANAENT-AHHLHQYAILGSFYAKNVRGVAHPRIGLLNNGTETTKGDP 187
>CADH1_MOUSE (P09803) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)| (Cadherin-1) (ARC-1) (CD324 antigen) [Contains: E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3] Length = 884 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +3 Query: 213 RHLSRGSYLYPLRMVTTTGHPRSGLLQNQTKINPGEPQTLT 335 RHL RG L +R TG PR+ ++ T+T Sbjct: 46 RHLERGHVLGRVRFEGCTGRPRTAFFSEDSRFKVATDGTIT 86
>PLK3_CAEEL (Q20845) Serine/threonine-protein kinase plk-3 (EC 2.7.11.21)| (Polo-like kinase 3) Length = 615 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 205 HKQGTFQEEAIYIHCAW*QPLAIHDRVCFKIRPRLIL 315 +++G F E + HC + L +DR+ K+ P++IL Sbjct: 35 YEKGAFLGEGGFAHCFEFRKLDCNDRLAVKVVPKVIL 71
>CO6_PANTR (P61134) Complement component C6 precursor| Length = 934 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = -2 Query: 297 DFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNFCLVTNFLVYYCIPNPRRSEP 124 DFE PIVD +PCAV + L K AL Y +K + C C P P P Sbjct: 484 DFELAPIVDLVRNIPCAVTKRNNLRK-ALQEYAAKFDPC--------QCAPCPNNGRP 532
>CO6_HUMAN (P13671) Complement component C6 precursor| Length = 934 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = -2 Query: 297 DFEANPIVDGQWLLPCAVDIDSFLLKGALLVYFSKPNFCLVTNFLVYYCIPNPRRSEP 124 DFE PIVD +PCAV + L K AL Y +K + C C P P P Sbjct: 484 DFELAPIVDLVRNIPCAVTKRNNLRK-ALQEYAAKFDPC--------QCAPCPNNGRP 532 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,105,015 Number of Sequences: 219361 Number of extensions: 1376127 Number of successful extensions: 3083 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3028 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3083 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
