>gb|AY104784.1| Zea mays PCO129009 mRNA sequence
          Length = 1520

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 370
            ||||||||||| |||||||| || || |||||||| |||||||||||   ||||||||||
Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024

                                  
Query: 371  atcaagatgataagcagcacta 392
            |||| |||||| || |||||||
Sbjct: 1023 atcaggatgatgagaagcacta 1002

>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence
          Length = 436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                       
Query: 311 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 370
           ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89

                                 
Query: 371 atcaagatgataagcagcacta 392
           |||||||||||||| |||||||
Sbjct: 88  atcaagatgataaggagcacta 67

>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 315    ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
              ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455

                                
Query: 375    agatgataagcagcacta 392
              ||||||| ||||||||||
Sbjct: 114454 agatgatcagcagcacta 114437

>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full
            insert sequence
          Length = 1371

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 315  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983

                              
Query: 375  agatgataagcagcacta 392
            ||||||| ||||||||||
Sbjct: 982  agatgattagcagcacta 965

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 315     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 375     agatgataagcagcacta 392
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 315     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160

                                 
Query: 375     agatgataagcagcacta 392
               ||||||| ||||||||||
Sbjct: 1276161 agatgatcagcagcacta 1276178

>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full
            insert sequence
          Length = 1354

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 315  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968

                              
Query: 375  agatgataagcagcacta 392
            ||||||| ||||||||||
Sbjct: 967  agatgatcagcagcacta 950

>gb|AY109148.1| Zea mays PCO129008 mRNA sequence
          Length = 1389

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 311  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 370
            ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025

                                  
Query: 371  atcaagatgataagcagcacta 392
            |||||||||||||| |||||||
Sbjct: 1024 atcaagatgataaggagcacta 1003

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 315     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881

                                 
Query: 375     agatgataagcagcacta 392
               ||||||| ||||||||||
Sbjct: 1273882 agatgatcagcagcacta 1273899

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 315     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 375     agatgataagcagcacta 392
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037

>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 315   ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 374
             ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002

                               
Query: 375   agatgataagcagcacta 392
             ||||||| ||||||||||
Sbjct: 90003 agatgattagcagcacta 90020

>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 382   aagcagcactacacccacaaa 402
             |||||||||||||||||||||
Sbjct: 78885 aagcagcactacacccacaaa 78905

>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 382    aagcagcactacacccacaaa 402
              |||||||||||||||||||||
Sbjct: 248536 aagcagcactacacccacaaa 248516

>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   aagcagcactacacccacaaa 402
             |||||||||||||||||||||
Sbjct: 16848 aagcagcactacacccacaaa 16828

>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence
          Length = 7708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 214  ggcacctttcaagaggaagct 234
            |||||||||||||||||||||
Sbjct: 4759 ggcacctttcaagaggaagct 4779

>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete
              sequence
          Length = 169471

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    ggcacctttcaagaggaagct 234
              |||||||||||||||||||||
Sbjct: 127172 ggcacctttcaagaggaagct 127192

>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence
          Length = 220084

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    ggcacctttcaagaggaagct 234
              |||||||||||||||||||||
Sbjct: 130358 ggcacctttcaagaggaagct 130378

>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences
          Length = 105288

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    ggcacctttcaagaggaagct 234
              |||||||||||||||||||||
Sbjct: 100473 ggcacctttcaagaggaagct 100493

>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    aaaatacacaagcaaggcac 218
              ||||||||||||||||||||
Sbjct: 137595 aaaatacacaagcaaggcac 137614

>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   caagaggaagctatctatat 242
             ||||||||||||||||||||
Sbjct: 94685 caagaggaagctatctatat 94666

>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      ggctattcacagagaaaact 64
               ||||||||||||||||||||
Sbjct: 3169737 ggctattcacagagaaaact 3169718

>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21
              Contains the 3' end of the CROCC gene for ciliary rootlet
              coiled-coil rootletin (KIAA0445), the MFAP2 gene for
              microfibrillar-associated protein 2, a novel gene, the gene
              for a novel protein, the SDHB gene for succinate
              dehydrogenase complex subunit B iron sulfur (Ip), the PADI2
              gene for type II peptidyl arginine deiminase, complete
              sequence
          Length = 216497

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    atccccatcatgcagcagag 363
              ||||||||||||||||||||
Sbjct: 154639 atccccatcatgcagcagag 154620

>gb|AC011375.5| Homo sapiens chromosome 5 clone CTB-119L1, complete sequence
          Length = 107044

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acagagaaaactggaaacaa 72
             ||||||||||||||||||||
Sbjct: 30314 acagagaaaactggaaacaa 30333

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      agaagtttggcttagaaaaa 202
                ||||||||||||||||||||
Sbjct: 33106724 agaagtttggcttagaaaaa 33106743

>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
             sequence
          Length = 186063

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   gaggaagctatctatatcca 245
             ||||||||||||||||||||
Sbjct: 11543 gaggaagctatctatatcca 11562

>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   agaagtttggcttagaaaaa 202
             ||||||||||||||||||||
Sbjct: 22384 agaagtttggcttagaaaaa 22403

>dbj|D00488.1|D00488S1 Potato virus Y genomic RNA, 5' end of the RNA genome
          Length = 173

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  agagaaaactggaaacaatt 74
           ||||||||||||||||||||
Sbjct: 148 agagaaaactggaaacaatt 129

>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   gaggaagctatctatatcca 245
             ||||||||||||||||||||
Sbjct: 22631 gaggaagctatctatatcca 22612

>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   caagaggaagctatctatat 242
             ||||||||||||||||||||
Sbjct: 35728 caagaggaagctatctatat 35709

>gb|M96425.1|PMVCG Pepper mottle virus complete genome
          Length = 9640

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  agagaaaactggaaacaatt 74
           ||||||||||||||||||||
Sbjct: 148 agagaaaactggaaacaatt 129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,711,847
Number of Sequences: 3902068
Number of extensions: 3711847
Number of successful extensions: 72239
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72075
Number of HSP's gapped (non-prelim): 164
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)