>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 346 GTEGLGSYPGYAPLPHLPPAFIPSYNAHYP---KFLLP 380

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 382 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>BETT_ECOLI (P0ABC9) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>BETT_ECO57 (P0ABD0) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,226,282
Number of Sequences: 219361
Number of extensions: 809004
Number of successful extensions: 2626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)