>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 4e-19
 Identities = 124/148 (83%)
 Strand = Plus / Minus

                                                                            
Query: 231      ccaagctgaaggcgccaatcttcaagctgtttctttacctgttctgaacccgtagaaccg 290
                |||||||||  ||||||||| || |||||||| ||||| || || || || ||||| |||
Sbjct: 10819243 ccaagctgagtgcgccaatcctcgagctgtttttttacttgctccgagcctgtagagccg 10819184

                                                                            
Query: 291      taagatatgaacttgttgacggcgttttccacacccaaataggcgtacacatcggcctcg 350
                ||||||||||||||||| |||||||| ||||| |||| |||  ||||||||||| |||| 
Sbjct: 10819183 taagatatgaacttgtttacggcgttctccactcccagatactcgtacacatcgccctca 10819124

                                            
Query: 351      aagacagggtgaaccgctttcaagtcgt 378
                || || |||||||| | ||||| |||||
Sbjct: 10819123 aaaacggggtgaacagatttcaggtcgt 10819096

>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  103 bits (52), Expect = 4e-19
 Identities = 124/148 (83%)
 Strand = Plus / Plus

                                                                         
Query: 231   ccaagctgaaggcgccaatcttcaagctgtttctttacctgttctgaacccgtagaaccg 290
             |||||||||  ||||||||| || |||||||| ||||| || || || || ||||| |||
Sbjct: 35644 ccaagctgagtgcgccaatcctcgagctgtttttttacttgctccgagcctgtagagccg 35703

                                                                         
Query: 291   taagatatgaacttgttgacggcgttttccacacccaaataggcgtacacatcggcctcg 350
             ||||||||||||||||| |||||||| ||||| |||| |||  ||||||||||| |||| 
Sbjct: 35704 taagatatgaacttgtttacggcgttctccactcccagatactcgtacacatcgccctca 35763

                                         
Query: 351   aagacagggtgaaccgctttcaagtcgt 378
             || || |||||||| | ||||| |||||
Sbjct: 35764 aaaacggggtgaacagatttcaggtcgt 35791

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 4e-19
 Identities = 124/148 (83%)
 Strand = Plus / Minus

                                                                            
Query: 231      ccaagctgaaggcgccaatcttcaagctgtttctttacctgttctgaacccgtagaaccg 290
                |||||||||  ||||||||| || |||||||| ||||| || || || || ||||| |||
Sbjct: 10817344 ccaagctgagtgcgccaatcctcgagctgtttttttacttgctccgagcctgtagagccg 10817285

                                                                            
Query: 291      taagatatgaacttgttgacggcgttttccacacccaaataggcgtacacatcggcctcg 350
                ||||||||||||||||| |||||||| ||||| |||| |||  ||||||||||| |||| 
Sbjct: 10817284 taagatatgaacttgtttacggcgttctccactcccagatactcgtacacatcgccctca 10817225

                                            
Query: 351      aagacagggtgaaccgctttcaagtcgt 378
                || || |||||||| | ||||| |||||
Sbjct: 10817224 aaaacggggtgaacagatttcaggtcgt 10817197

>dbj|AK070638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056K03, full
            insert sequence
          Length = 1834

 Score =  103 bits (52), Expect = 4e-19
 Identities = 124/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 231  ccaagctgaaggcgccaatcttcaagctgtttctttacctgttctgaacccgtagaaccg 290
            |||||||||  ||||||||| || |||||||| ||||| || || || || ||||| |||
Sbjct: 1633 ccaagctgagtgcgccaatcctcgagctgtttttttacttgctccgagcctgtagagccg 1574

                                                                        
Query: 291  taagatatgaacttgttgacggcgttttccacacccaaataggcgtacacatcggcctcg 350
            ||||||||||||||||| |||||||| ||||| |||| |||  ||||||||||| |||| 
Sbjct: 1573 taagatatgaacttgtttacggcgttctccactcccagatactcgtacacatcgccctca 1514

                                        
Query: 351  aagacagggtgaaccgctttcaagtcgt 378
            || || |||||||| | ||||| |||||
Sbjct: 1513 aaaacggggtgaacagatttcaggtcgt 1486

>dbj|AK070233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042D21, full
           insert sequence
          Length = 983

 Score =  103 bits (52), Expect = 4e-19
 Identities = 124/148 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 ccaagctgaaggcgccaatcttcaagctgtttctttacctgttctgaacccgtagaaccg 290
           |||||||||  ||||||||| || |||||||| ||||| || || || || ||||| |||
Sbjct: 782 ccaagctgagtgcgccaatcctcgagctgtttttttacttgctccgagcctgtagagccg 723

                                                                       
Query: 291 taagatatgaacttgttgacggcgttttccacacccaaataggcgtacacatcggcctcg 350
           ||||||||||||||||| |||||||| ||||| |||| |||  ||||||||||| |||| 
Sbjct: 722 taagatatgaacttgtttacggcgttctccactcccagatactcgtacacatcgccctca 663

                                       
Query: 351 aagacagggtgaaccgctttcaagtcgt 378
           || || |||||||| | ||||| |||||
Sbjct: 662 aaaacggggtgaacagatttcaggtcgt 635

>gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, complete sequence
          Length = 139356

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   agctgtttctttacctgttct 275
             |||||||||||||||||||||
Sbjct: 90646 agctgtttctttacctgttct 90666

>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 320    cacacccaaataggcgtacac 340
              |||||||||||||||||||||
Sbjct: 784291 cacacccaaataggcgtacac 784271

>gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6, complete sequence
          Length = 158247

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 320    cacacccaaataggcgtacac 340
              |||||||||||||||||||||
Sbjct: 113897 cacacccaaataggcgtacac 113877

>gb|AC139883.8| Mus musculus chromosome 16, clone RP24-304O16, complete sequence
          Length = 138043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 250   cttcaagctgtttctttacctgttc 274
             |||| ||||||||||||||||||||
Sbjct: 16801 cttccagctgtttctttacctgttc 16777

>gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, complete sequence
          Length = 56515

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   acccacctcccaaaataagca 168
             |||||||||||||||||||||
Sbjct: 11566 acccacctcccaaaataagca 11546

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 330     taggcgtacacatcggcctcg 350
               |||||||||||||||||||||
Sbjct: 3584961 taggcgtacacatcggcctcg 3584981

>gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosome 16, complete
             sequence
          Length = 177627

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 250   cttcaagctgtttctttacctgttc 274
             |||| ||||||||||||||||||||
Sbjct: 70478 cttccagctgtttctttacctgttc 70454

>emb|AL844888.12| Mouse DNA sequence from clone RP23-193F18 on chromosome 2, complete
              sequence
          Length = 225216

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 80     aatgaagcaacagccacaatagttt 104
              ||||||| |||||||||||||||||
Sbjct: 185937 aatgaagaaacagccacaatagttt 185913

>gb|AC005371.1| Homo sapiens chromosome 5, BAC clone 342p15 (LBNL H189), complete
             sequence
          Length = 142600

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cactccaactctcaaatgaa 85
             ||||||||||||||||||||
Sbjct: 42895 cactccaactctcaaatgaa 42876

>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     catttcagtaaaattgcatg 37
              ||||||||||||||||||||
Sbjct: 128958 catttcagtaaaattgcatg 128977

>gb|AC119828.9| Mus musculus chromosome 10, clone RP23-186A24, complete sequence
          Length = 205915

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    acccacctcccaaaataagc 167
              ||||||||||||||||||||
Sbjct: 101784 acccacctcccaaaataagc 101803

>ref|XM_663077.1| Cryptosporidium hominis TU502 histone deacetylase (Chro.60173)
           partial mRNA
          Length = 1299

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 ccacctcccaaaataagcaa 169
           ||||||||||||||||||||
Sbjct: 890 ccacctcccaaaataagcaa 871

>gb|CP000244.1| Escherichia coli UTI89 plasmid pUTI89, complete sequence
          Length = 114230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gggggatttattcctctgtt 206
            ||||||||||||||||||||
Sbjct: 5826 gggggatttattcctctgtt 5845

>ref|XM_503664.1| Yarrowia lipolytica CLIB122, YALI0E07491g predicted mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   aaaattgcatgtgccttaca 46
            ||||||||||||||||||||
Sbjct: 984  aaaattgcatgtgccttaca 1003

>emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid
          Length = 120592

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gggggatttattcctctgtt 206
             ||||||||||||||||||||
Sbjct: 66781 gggggatttattcctctgtt 66800

>gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, complete sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     cactccaactctcaaatgaa 85
              ||||||||||||||||||||
Sbjct: 101256 cactccaactctcaaatgaa 101237

>dbj|AK135252.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720447D11 product:unclassifiable, full insert
           sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 160 aaataagcaacagccacactagac 183
           ||||||| ||||||||||||||||
Sbjct: 137 aaataagtaacagccacactagac 114

>gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, complete sequence
          Length = 169069

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     catttcagtaaaattgcatg 37
              ||||||||||||||||||||
Sbjct: 140526 catttcagtaaaattgcatg 140507

>gb|AC160059.7| Mus musculus 6 BAC RP23-172L21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 212292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 22     tcagtaaaattgcatgtgccttacaaataaaa 53
              ||||||||||||||| | | ||||||||||||
Sbjct: 103376 tcagtaaaattgcatatccattacaaataaaa 103407

>gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206857

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 22    tcagtaaaattgcatgtgccttacaaataaaa 53
             ||||||||||||||| | | ||||||||||||
Sbjct: 48867 tcagtaaaattgcatatccattacaaataaaa 48836

>ref|XM_392254.2| PREDICTED: Apis mellifera similar to ENSANGP00000009228
           (LOC408718), mRNA
          Length = 4347

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 tcaagctgtttctttacctg 271
           ||||||||||||||||||||
Sbjct: 882 tcaagctgtttctttacctg 901

>gb|AY158046.1| Chanos chanos rhodopsin gene, partial cds
          Length = 702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 133 ggtttacagactacaacccacctc 156
           ||||| ||||||||||||||||||
Sbjct: 293 ggtttgcagactacaacccacctc 270

>gb|AF222134.1|AF222134 Escherichia coli clone SauE4.C10 neonatal meningitis
           strain-specific DNA sequence
          Length = 240

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 gggggatttattcctctgtt 206
           ||||||||||||||||||||
Sbjct: 154 gggggatttattcctctgtt 135

>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4,
             complete sequence
          Length = 158481

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tttattcctctgttgatgct 212
             ||||||||||||||||||||
Sbjct: 29980 tttattcctctgttgatgct 29999

>gb|AF148142.1|AF148142 Chanos chanos rhodopsin (Rhod) gene, partial cds
          Length = 735

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 133 ggtttacagactacaacccacctc 156
           ||||| ||||||||||||||||||
Sbjct: 170 ggtttgcagactacaacccacctc 147

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aaaattgcatgtgccttaca 46
              ||||||||||||||||||||
Sbjct: 855039 aaaattgcatgtgccttaca 855020

>emb|AL772213.7| Mouse DNA sequence from clone RP23-104G16 on chromosome 2, complete
              sequence
          Length = 218975

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    aaataagcaacagccacactagac 183
              ||||||| ||||||||||||||||
Sbjct: 104809 aaataagtaacagccacactagac 104786


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,412,778
Number of Sequences: 3902068
Number of extensions: 3412778
Number of successful extensions: 59798
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59675
Number of HSP's gapped (non-prelim): 123
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)