ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3... 33 0.23
2CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3... 31 0.67
3CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.... 31 0.67
4SIM1_HUMAN (P81133) Single-minded homolog 1 28 5.6
5SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1) 28 5.6
6YNJ7_YEAST (P50947) Hypothetical 37.0 kDa protein in RAS2-RPS7B ... 27 9.6
7SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing pr... 27 9.6
8CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell su... 27 9.6
9ZN396_HUMAN (Q96N95) Zinc finger protein 396 (Zinc finger and SC... 27 9.6

>CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3.2.-) (Signal|
           transduction protein CBL-B-A) (SH3-binding protein
           CBL-B-A)
          Length = 918

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 PPDARQCKHVNHRDTSPC 277
           PPD+R C+H++H D  PC
Sbjct: 575 PPDSRTCRHLHHADNVPC 592



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>CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B-B) (SH3-binding protein
           CBL-B-B)
          Length = 764

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 PPDARQCKHVNHRDTSPC 277
           PPD+R C+H++H +  PC
Sbjct: 577 PPDSRTCRHLHHAENVPC 594



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>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
          Length = 982

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 PPDARQCKHVNHRDTSPC 277
           PPD+R C+H++H +  PC
Sbjct: 575 PPDSRTCRHLHHTENVPC 592



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>SIM1_HUMAN (P81133) Single-minded homolog 1|
          Length = 766

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 218 QPPPDARQCKHVNHRDTSPCDH 283
           QPPP    C      +TSPCDH
Sbjct: 611 QPPPTGEVCHGSALANTSPCDH 632



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>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)|
          Length = 765

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 218 QPPPDARQCKHVNHRDTSPCDH 283
           QPPP    C       TSPCDH
Sbjct: 610 QPPPTGEVCHSSALASTSPCDH 631



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>YNJ7_YEAST (P50947) Hypothetical 37.0 kDa protein in RAS2-RPS7B intergenic|
           region
          Length = 330

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 54  PAIHFSLHAPSNYRGIMSRNKNKSNQKDQQPLKSEQKR 167
           PA+H        +  +M + ++KSN K  Q LKSE +R
Sbjct: 129 PAMHL-------HHELMEKIESKSNSKSSQALKSESRR 159



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>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (4SNc-Tudor domain
           protein)
          Length = 897

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 30  VALHKNVTPAIHFSLHAPSNYRGIMSRNKNKSNQKDQQPLKSEQKRSTCVDLALRAHRIG 209
           VAL +N    +HF+    S Y+ ++S  ++   +K++     E+K +  V     A   G
Sbjct: 623 VALVENALSKVHFTAERSSYYKTLVSAEESARQRKEKLWANYEEKPNEEVAQVTEAKERG 682

Query: 210 R 212
           R
Sbjct: 683 R 683



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>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34
           antigen)
          Length = 344

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 119 QIKPKRPTTFEK*AKKIDVRGSSPQGS*DRALSQPPPDARQCKHVNHRDTSP 274
           +IK  R +T E+  K    + S+P      A   PPP     +   HR   P
Sbjct: 243 EIKASRMSTVERGPKPHSTQASAPASQNPVASQAPPPPGHHLQTPGHRPLPP 294



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>ZN396_HUMAN (Q96N95) Zinc finger protein 396 (Zinc finger and SCAN|
           domain-containing protein 14)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 30  VALHKNVTPAIHFSLHAPSNYRGIMSRNKNKSNQKDQQPLKSEQKRSTC 176
           + LH NV+  +H +    S YRG   ++     ++     K +QK   C
Sbjct: 208 IELHCNVSNILHMNGSQSSTYRGTYEQDGRFEKRQGNPSWKKQQKCDEC 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,478,274
Number of Sequences: 219361
Number of extensions: 626656
Number of successful extensions: 1357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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