ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTG3C_BACSU (P20166) PTS system glucose-specific EIICBA componen... 28 5.5
2UL88_HHV7J (P52364) Protein U59 27 9.3
3MRJP1_APIME (O18330) Major royal jelly protein 1 precursor (MRJP... 27 9.3

>PTG3C_BACSU (P20166) PTS system glucose-specific EIICBA component (EIICBA-Glc)|
           (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC
           component (PTS system glucose-specific EIIC component);
           Glucose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.6
          Length = 699

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 219 QFYYGPNAGDGFCYLQSEVFSMQTVRPEVVHYNSTMH-IKVQAESAR 82
           Q + G   GDGF  L SE   +  VR ++++   T H I +Q++  R
Sbjct: 569 QVFSGKMMGDGFAILPSEGIVVSPVRGKILNVFPTKHAIGLQSDGGR 615



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>UL88_HHV7J (P52364) Protein U59|
          Length = 347

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 183 CYLQSEVFSMQTVRPEVVHYNSTMHIKVQA 94
           C L + ++S +T+ PE+V    ++H+ V+A
Sbjct: 257 CTLLNSIYSYKTLLPEIVDNTRSIHVVVKA 286



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>MRJP1_APIME (O18330) Major royal jelly protein 1 precursor (MRJP-1) (Bee-milk|
           protein) [Contains: Jellein-1 (Jelleine-I); Jellein-2
           (Jelleine-II); Jellein-4 (Jelleine-IV)]
          Length = 432

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 213 YYGPNAGDGFCYLQSEVFSMQTVRPEVVHYNSTMHIKVQAESARI 79
           YY P A     Y+ +E F     +   +HY    +I     SA++
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKV 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,782,532
Number of Sequences: 219361
Number of extensions: 461182
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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