ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ004857.1|HVAJ4857 Hordeum vulgare mRNA for hypothetical pr... 394 e-107
2gb|AY805122.1| Zea mays clone 5Zm6R25 putative protein kinase-li... 188 9e-45
3ref|NM_189334.1| Oryza sativa (japonica cultivar-group), predic... 178 8e-42
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
5dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
6dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
7dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 8e-42
8emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 44 0.31
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.2
10gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.2
11ref|XM_478649.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
12gb|AC139042.18| Mus musculus chromosome 18, clone RP23-261C19, c... 42 1.2
13emb|Y00309.1|MMLDHAG Mouse LDH-A gene for lactate dehydrogenase-A 42 1.2
14emb|X03753.1|MMALDH1 Mouse LDH-A gene for lactate dehydrogenase ... 42 1.2
15gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 ma... 42 1.2
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
17gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.2
18dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AK101616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
20dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.2
22gb|AC113953.6| Mus musculus chromosome 18, clone RP24-215C1, com... 42 1.2
23gb|U05674.1|RNU05674 Rattus norvegicus Sprague Dawley lactate de... 42 1.2
24dbj|AP000476.2| Homo sapiens genomic DNA, chromosome 21q21.2, cl... 42 1.2
25gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosom... 40 4.9
26gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 4.9
27ref|XM_368674.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 4.9
28gb|DQ145546.1| Sinorhizobium meliloti plasmid pSmeSM11a, complet... 40 4.9
29gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.9
30gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosom... 40 4.9
31emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 4.9
32gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete s... 40 4.9
33gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 4.9
34emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.9
35emb|AJ005522.1|HAA005522 Hippopotamus amphibius gene for pancrea... 40 4.9
36dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 4.9
37dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 4.9
38gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromo... 40 4.9
39gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, comp... 40 4.9
40gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, comp... 40 4.9
41gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 4.9
42gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromo... 40 4.9
43gb|AE004729.1| Pseudomonas aeruginosa PAO1, section 290 of 529 o... 40 4.9
44emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.9
45emb|Z78016.1|CER186 Caenorhabditis elegans Cosmid R186, complete... 40 4.9
46gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 4.9
47gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 4.9
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.9
49gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome ... 40 4.9
50gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone 792C1... 40 4.9
51gb|AC158297.3| Mus musculus chromosome 7, clone RP24-336M17, com... 40 4.9
52gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 4.9 
>emb|AJ004857.1|HVAJ4857 Hordeum vulgare mRNA for hypothetical protein
          Length = 1225

 Score =  394 bits (199), Expect = e-107
 Identities = 266/290 (91%)
 Strand = Plus / Minus

                                                                        
Query: 69   ggagtaatcagatcctggctgactcggcctgcaccttgatgtgcatggtggagttgtagt 128
            ||||| ||||| ||||||   ||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1035 ggagtcatcagttcctggtanacttggcctgcaccttgatgtgcatggtgganttgtagt 976

                                                                        
Query: 129  gcaccacctcgggccgcaccgtctgcatcgagaacacctccgactgcaggtagcagaacc 188
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 975  gcaccacctcgggccgcaccgtctgcatcganaacacctccgactgcaggtagcaggacc 916

                                                                        
Query: 189  cgtcgccggcgttggggccgtagtagaactgcgccgccgcgcacgcgcagtcgtccaggc 248
            |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 915  cgtcgccggcgtcgcggccgtagtaaaactgcgccgccgcgcacgcgcagtcgtccaggc 856

                                                                        
Query: 249  acgccttcttgcacgcctcctcgcccacccgctccacggcccgcatgctcgtggcgtggt 308
            ||||| |||||||||||||||||| |||||||||||  |||||||||||||| | |||||
Sbjct: 855  acgccctcttgcacgcctcctcgctcacccgctccatcgcccgcatgctcgttgtgtggt 796

                                                              
Query: 309  cgttgaagtagcccgtgcccggcagcgacaccagccggtgctgcgcgcgc 358
            ||||||||||  |||||| || ||||||||| | ||||||||||||||||
Sbjct: 795  cgttgaagtacgccgtgctcgccagcgacacnanccggtgctgcgcgcgc 746
to top
>gb|AY805122.1| Zea mays clone 5Zm6R25 putative protein kinase-like protein mRNA,
           partial cds
          Length = 239

 Score =  188 bits (95), Expect = 9e-45
 Identities = 152/171 (88%)
 Strand = Plus / Minus

                                                                       
Query: 94  ggcctgcaccttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctg 153
           |||| |||||||||  ||||||||||||||||||||||||||||| ||| ||  ||||| 
Sbjct: 197 ggcccgcaccttgagatgcatggtggagttgtagtgcaccacctccggctgcgacgtctc 138

                                                                       
Query: 154 catcgagaacacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagta 213
           || ||| | |||||||||||||||||||||||| || |||||||||| || |||||||  
Sbjct: 137 cagcgacagcacctccgactgcaggtagcagaagccatcgccggcgtcggtgccgtagac 78

                                                              
Query: 214 gaactgcgccgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgc 264
           |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 77  gaactgcgccgccgcgcaggcgcagtcgtccaggcacgccttcctgcacgc 27
to top
>ref|NM_189334.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1410

 Score =  178 bits (90), Expect = 8e-42
 Identities = 216/258 (83%)
 Strand = Plus / Minus

                                                                        
Query: 103  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 162
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 1359 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1300

                                                                        
Query: 163  cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 222
            |||||||||||||||||||||||| ||||||  || || |   |||||   |||||||||
Sbjct: 1299 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1240

                                                                        
Query: 223  cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 282
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||||||||| |||
Sbjct: 1239 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1180

                                                                        
Query: 283  cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 342
            ||  | ||||||||| ||| |||||  |||||||||| ||||| |  |||||||||||||
Sbjct: 1179 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 1120

                              
Query: 343  ccggtgctgcgcgcgccg 360
            ||||||| ||||||||||
Sbjct: 1119 ccggtgccgcgcgcgccg 1102
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  178 bits (90), Expect = 8e-42
 Identities = 216/258 (83%)
 Strand = Plus / Minus

                                                                            
Query: 103      cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 162
                |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 42232582 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 42232523

                                                                            
Query: 163      cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 222
                |||||||||||||||||||||||| ||||||  || || |   |||||   |||||||||
Sbjct: 42232522 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 42232463

                                                                            
Query: 223      cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 282
                ||||  ||||||||||||| ||| ||||||   |||||||||| |||||||||||| |||
Sbjct: 42232462 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 42232403

                                                                            
Query: 283      cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 342
                ||  | ||||||||| ||| |||||  |||||||||| ||||| |  |||||||||||||
Sbjct: 42232402 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 42232343

                                  
Query: 343      ccggtgctgcgcgcgccg 360
                ||||||| ||||||||||
Sbjct: 42232342 ccggtgccgcgcgcgccg 42232325
to top
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0401G10
          Length = 160704

 Score =  178 bits (90), Expect = 8e-42
 Identities = 216/258 (83%)
 Strand = Plus / Minus

                                                                        
Query: 103  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 162
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 4539 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 4480

                                                                        
Query: 163  cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 222
            |||||||||||||||||||||||| ||||||  || || |   |||||   |||||||||
Sbjct: 4479 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 4420

                                                                        
Query: 223  cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 282
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||||||||| |||
Sbjct: 4419 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 4360

                                                                        
Query: 283  cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 342
            ||  | ||||||||| ||| |||||  |||||||||| ||||| |  |||||||||||||
Sbjct: 4359 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 4300

                              
Query: 343  ccggtgctgcgcgcgccg 360
            ||||||| ||||||||||
Sbjct: 4299 ccggtgccgcgcgcgccg 4282
to top
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1294_F06
          Length = 121088

 Score =  178 bits (90), Expect = 8e-42
 Identities = 216/258 (83%)
 Strand = Plus / Minus

                                                                          
Query: 103    cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 162
              |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 105780 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 105721

                                                                          
Query: 163    cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 222
              |||||||||||||||||||||||| ||||||  || || |   |||||   |||||||||
Sbjct: 105720 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 105661

                                                                          
Query: 223    cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 282
              ||||  ||||||||||||| ||| ||||||   |||||||||| |||||||||||| |||
Sbjct: 105660 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 105601

                                                                          
Query: 283    cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 342
              ||  | ||||||||| ||| |||||  |||||||||| ||||| |  |||||||||||||
Sbjct: 105600 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 105541

                                
Query: 343    ccggtgctgcgcgcgccg 360
              ||||||| ||||||||||
Sbjct: 105540 ccggtgccgcgcgcgccg 105523
to top
>dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B03, full
            insert sequence
          Length = 1610

 Score =  178 bits (90), Expect = 8e-42
 Identities = 216/258 (83%)
 Strand = Plus / Minus

                                                                        
Query: 103  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 162
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 1414 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1355

                                                                        
Query: 163  cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 222
            |||||||||||||||||||||||| ||||||  || || |   |||||   |||||||||
Sbjct: 1354 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1295

                                                                        
Query: 223  cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 282
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||||||||| |||
Sbjct: 1294 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1235

                                                                        
Query: 283  cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 342
            ||  | ||||||||| ||| |||||  |||||||||| ||||| |  |||||||||||||
Sbjct: 1234 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 1175

                              
Query: 343  ccggtgctgcgcgcgccg 360
            ||||||| ||||||||||
Sbjct: 1174 ccggtgccgcgcgcgccg 1157
to top
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
             sequence
          Length = 231197

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 219   gcgccgccgcgcacgcgcagtc 240
             ||||||||||||||||||||||
Sbjct: 29522 gcgccgccgcgcacgcgcagtc 29501
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 223     cgccgcgcacgcgcagtcgtc 243
               |||||||||||||||||||||
Sbjct: 2014248 cgccgcgcacgcgcagtcgtc 2014268
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 327     ccggcagcgacaccagccggt 347
               |||||||||||||||||||||
Sbjct: 2899625 ccggcagcgacaccagccggt 2899645



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 2372421 gtagcccgtgcccggcagcg 2372440
to top
>ref|XM_478649.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3237

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 223  cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 263
            |||| |||||| ||||| | ||||||||||||||| |||||
Sbjct: 1388 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 1348
to top
>gb|AC139042.18| Mus musculus chromosome 18, clone RP23-261C19, complete sequence
          Length = 195202

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    gctcagggtgggagtaatcag 79
             |||||||||||||||||||||
Sbjct: 30282 gctcagggtgggagtaatcag 30262
to top
>emb|Y00309.1|MMLDHAG Mouse LDH-A gene for lactate dehydrogenase-A
          Length = 12851

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  gtgctgcgcgcgccgccccgg 366
            |||||||||||||||||||||
Sbjct: 2548 gtgctgcgcgcgccgccccgg 2568
to top
>emb|X03753.1|MMALDH1 Mouse LDH-A gene for lactate dehydrogenase A (exons 1-2)
          Length = 3157

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 346 gtgctgcgcgcgccgccccgg 366
           |||||||||||||||||||||
Sbjct: 969 gtgctgcgcgcgccgccccgg 989
to top
>gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 map 7, complete sequence
          Length = 223438

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    gtgctgcgcgcgccgccccgg 366
              |||||||||||||||||||||
Sbjct: 131735 gtgctgcgcgcgccgccccgg 131715
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 223      cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 263
                |||| |||||| ||||| | ||||||||||||||| |||||
Sbjct: 21813389 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 21813429
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 323     gtgcccggcagcgacaccagc 343
               |||||||||||||||||||||
Sbjct: 1396742 gtgcccggcagcgacaccagc 1396722



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    cacccgctccacggcccgca 293
              ||||||||||||||||||||
Sbjct: 663807 cacccgctccacggcccgca 663826
to top
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534A03
          Length = 153170

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 223    cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 263
              |||| |||||| ||||| | ||||||||||||||| |||||
Sbjct: 130572 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 130612
to top
>dbj|AK101616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052G09, full
            insert sequence
          Length = 3238

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 223  cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 263
            |||| |||||| ||||| | ||||||||||||||| |||||
Sbjct: 1389 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 1349
to top
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041B22
          Length = 142446

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 223   cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 263
             |||| |||||| ||||| | ||||||||||||||| |||||
Sbjct: 27065 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 27105
to top
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      ctcatggtcaactttggaatt 25
              |||||||||||||||||||||
Sbjct: 326230 ctcatggtcaactttggaatt 326210
to top
>gb|AC113953.6| Mus musculus chromosome 18, clone RP24-215C1, complete sequence
          Length = 201174

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   gctcagggtgggagtaatcag 79
            |||||||||||||||||||||
Sbjct: 2047 gctcagggtgggagtaatcag 2067
to top
>gb|U05674.1|RNU05674 Rattus norvegicus Sprague Dawley lactate dehydrogenase A subunit
            gene, promoter region
          Length = 1192

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  gtgctgcgcgcgccgccccgg 366
            |||||||||||||||||||||
Sbjct: 1021 gtgctgcgcgcgccgccccgg 1041
to top
>dbj|AP000476.2| Homo sapiens genomic DNA, chromosome 21q21.2, clone:B86D9, LL56-APP
              region, complete sequence
          Length = 171452

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      ctcatggtcaactttggaatt 25
              |||||||||||||||||||||
Sbjct: 161611 ctcatggtcaactttggaatt 161591
to top
>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete
             sequence
          Length = 216816

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tttggaatttcaacatatat 36
             ||||||||||||||||||||
Sbjct: 12344 tttggaatttcaacatatat 12363
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 1603626 gtagcccgtgcccggcagcg 1603645
to top
>ref|XM_368674.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00570.4) partial mRNA
          Length = 1029

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 cccgtgcccggcagcgacac 339
           ||||||||||||||||||||
Sbjct: 658 cccgtgcccggcagcgacac 677
to top
>gb|DQ145546.1| Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence
          Length = 144170

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tggctgactcggcctgcacc 103
             ||||||||||||||||||||
Sbjct: 41028 tggctgactcggcctgcacc 41047
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 2850266 gtagcccgtgcccggcagcg 2850285
to top
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence
          Length = 216902

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ccgccgcgcacgcgcagtcg 241
              ||||||||||||||||||||
Sbjct: 113816 ccgccgcgcacgcgcagtcg 113835
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 330     gcagcgacaccagccggtgctgcgcgcg 357
               |||||||||||||| ||||| |||||||
Sbjct: 4967797 gcagcgacaccagcaggtgcggcgcgcg 4967770
to top
>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence
          Length = 31404

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   gcgacaccagccggtgctgc 352
             ||||||||||||||||||||
Sbjct: 12009 gcgacaccagccggtgctgc 12028
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 3037393 gtagcccgtgcccggcagcg 3037412
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 2580446 gtagcccgtgcccggcagcg 2580465
to top
>emb|AJ005522.1|HAA005522 Hippopotamus amphibius gene for pancreatic ribonuclease
          Length = 348

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 tgatgtgcatggtggagttg 124
           ||||||||||||||||||||
Sbjct: 244 tgatgtgcatggtggagttg 225
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 330     gcagcgacaccagccggtgctgcgcgcg 357
               |||||||||||||| ||||| |||||||
Sbjct: 4688174 gcagcgacaccagcaggtgcggcgcgcg 4688147
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     gcgacaccagccggtgctgc 352
               ||||||||||||||||||||
Sbjct: 2416439 gcgacaccagccggtgctgc 2416458
to top
>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
              sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    tgatgtgcatggtggagttg 124
              ||||||||||||||||||||
Sbjct: 142010 tgatgtgcatggtggagttg 142029
to top
>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence
          Length = 183378

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  tgatgtgcatggtggagttg 124
            ||||||||||||||||||||
Sbjct: 9598 tgatgtgcatggtggagttg 9579
to top
>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence
          Length = 178405

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tgatgtgcatggtggagttg 124
             ||||||||||||||||||||
Sbjct: 72808 tgatgtgcatggtggagttg 72789
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     gcgccgccgcgcacgcgcag 238
               ||||||||||||||||||||
Sbjct: 2170552 gcgccgccgcgcacgcgcag 2170533
to top
>gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromosome unknown, complete
              sequence
          Length = 168325

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    tgatgtgcatggtggagttg 124
              ||||||||||||||||||||
Sbjct: 144384 tgatgtgcatggtggagttg 144365
to top
>gb|AE004729.1| Pseudomonas aeruginosa PAO1, section 290 of 529 of the complete genome
          Length = 12189

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   ggtgctgcgcgcgccgcccc 364
             ||||||||||||||||||||
Sbjct: 10160 ggtgctgcgcgcgccgcccc 10179
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 344     cggtgctgcgcgcgccgccc 363
               ||||||||||||||||||||
Sbjct: 3267717 cggtgctgcgcgcgccgccc 3267736
to top
>emb|Z78016.1|CER186 Caenorhabditis elegans Cosmid R186, complete sequence
          Length = 29134

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   tcaactttggaatttcaaca 31
            ||||||||||||||||||||
Sbjct: 7681 tcaactttggaatttcaaca 7700
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 330     gcagcgacaccagccggtgctgcgcgcg 357
               |||||||||||||| ||||| |||||||
Sbjct: 4692153 gcagcgacaccagcaggtgcggcgcgcg 4692126
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 316     gtagcccgtgcccggcagcg 335
               ||||||||||||||||||||
Sbjct: 2308469 gtagcccgtgcccggcagcg 2308450
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 129     gcaccacctcgggccgcacc 148
               ||||||||||||||||||||
Sbjct: 2418982 gcaccacctcgggccgcacc 2419001
to top
>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence
          Length = 262262

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tttggaatttcaacatatat 36
             ||||||||||||||||||||
Sbjct: 31693 tttggaatttcaacatatat 31674
to top
>gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone 792C12 (LBNL H22), complete
             sequence
          Length = 45005

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tgatgtgcatggtggagttg 124
             ||||||||||||||||||||
Sbjct: 12645 tgatgtgcatggtggagttg 12664
to top
>gb|AC158297.3| Mus musculus chromosome 7, clone RP24-336M17, complete sequence
          Length = 196548

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttcaacatatatgccatag 43
              ||||||||||||||||||||
Sbjct: 149406 tttcaacatatatgccatag 149425
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 333     gcgacaccagccggtgctgc 352
               ||||||||||||||||||||
Sbjct: 1900611 gcgacaccagccggtgctgc 1900592


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,333,770
Number of Sequences: 3902068
Number of extensions: 2333770
Number of successful extensions: 49327
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47427
Number of HSP's gapped (non-prelim): 1900
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top