ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 32 0.59
2Z585B_PONPY (Q5RB30) Zinc finger protein 585B 31 1.0
3Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 30 1.3
4EURL_MOUSE (Q9D7G4) Protein EURL homolog 30 2.2
5SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 2.9
6SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 3.8
7GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 s... 28 5.0
8Z585A_HUMAN (Q6P3V2) Zinc finger protein 585A 28 8.5
9Z585A_PONPY (Q5RDX1) Zinc finger protein 585A 28 8.5

>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 926

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWM-HLDLQEKN*FRDEVLKTQRHAAH 187
           WSF+   E+ +QLA     P       +E +  TW   +D      FRD VLK    A H
Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD------FRDNVLKALEEARH 817

Query: 188 S 190
           S
Sbjct: 818 S 818



to top

>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTQRH 178
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WQHLDLSQRNLYRDVMLETYSH 62



to top

>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTQRH 178
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WRHLDLSQRNLYRDVMLETYSH 62



to top

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   KANWSFIYSMEKLLQLATQCNKPSRHAL 85
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120



to top

>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 925

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 209 LGLTRANYALRDAVFSRPR 153
           LG  + NY LRDA+FSR R
Sbjct: 467 LGCVKVNYRLRDAIFSRQR 485



to top

>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 944

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 209 LGLTRANYALRDAVFSRPR 153
           LG  + NY LRDA+FSR R
Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488



to top

>GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 subunit|
          Length = 364

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 17  FIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLDL 130
           FI SM    QL  + NK +R  +KQ   IFKT +H DL
Sbjct: 234 FIVSMSDYDQLDPEDNKYNR--MKQSYEIFKTIVHSDL 269



to top

>Z585A_HUMAN (Q6P3V2) Zinc finger protein 585A|
          Length = 769

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTQRH 178
           W HLD  ++N +RD +L+T  H
Sbjct: 41  WRHLDPSQRNLYRDVMLETYSH 62



to top

>Z585A_PONPY (Q5RDX1) Zinc finger protein 585A|
          Length = 737

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTQRH 178
           W HLD  ++N +RD +L+T  H
Sbjct: 9   WRHLDPSQRNLYRDVMLETYSH 30


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,592,135
Number of Sequences: 219361
Number of extensions: 421576
Number of successful extensions: 990
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top