ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC068288.6| Homo sapiens BAC clone RP11-592A2 from 2, complet... 38 0.67
2emb|AL158140.9| Human DNA sequence from clone RP11-217H19 on chr... 36 2.7
3gb|AC026412.4| Homo sapiens chromosome 5 clone CTD-2012J19, comp... 36 2.7
4emb|CR931691.1| Streptococcus pneumoniae strain nr. 34371 (serot... 36 2.7

>gb|AC068288.6| Homo sapiens BAC clone RP11-592A2 from 2, complete sequence
          Length = 124541

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    ttgtctaccttttcttgcc 29
             |||||||||||||||||||
Sbjct: 84792 ttgtctaccttttcttgcc 84810



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>emb|AL158140.9| Human DNA sequence from clone RP11-217H19 on chromosome Xq13.3-21.2
             Contains the 3' end of a novel pseudogene, complete
             sequence
          Length = 94862

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     acttgtctaccttttctt 26
             ||||||||||||||||||
Sbjct: 79162 acttgtctaccttttctt 79179



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>gb|AC026412.4| Homo sapiens chromosome 5 clone CTD-2012J19, complete sequence
          Length = 128694

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     accccacttgtctacctt 21
             ||||||||||||||||||
Sbjct: 73019 accccacttgtctacctt 73036



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>emb|CR931691.1| Streptococcus pneumoniae strain nr. 34371 (serotype 27)
          Length = 20135

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 9    acttgtctaccttttctt 26
            ||||||||||||||||||
Sbjct: 9532 acttgtctaccttttctt 9549


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,041
Number of Sequences: 3902068
Number of extensions: 189041
Number of successful extensions: 54220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54216
Number of HSP's gapped (non-prelim): 4
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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