ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR692_MIMIV (Q5UNV0) Hypothetical protein R692 33 0.28
2NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exch... 28 6.9

>YR692_MIMIV (Q5UNV0) Hypothetical protein R692|
          Length = 354

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +2

Query: 26  SISAQRKANKSARLRVAYN*SISNRVKTHSSNVPPQTGGKN 148
           ++S+Q  AN++A +   YN S+++    +++N   QTGG++
Sbjct: 288 NVSSQNNANRNASMATTYNNSVNSANSINTANTRSQTGGQD 328



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>NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3)|
           (NHE-3)
          Length = 503

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -2

Query: 137 LFEEARWMNEFLPC*ILISCRLPVVLRI-------CLLFSE 36
           L EE RWMNE +   I+ SC   V+L I        L+FSE
Sbjct: 42  LLEETRWMNESITALIIGSCTGIVILLISGGKSSRILVFSE 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,873,821
Number of Sequences: 219361
Number of extensions: 622408
Number of successful extensions: 1596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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