>YIAH_ECOLI (P37669) Inner membrane protein yiaH|
          Length = 331

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 208 IHTPTFRQTNKHCLSPVTWRV 270
           IHT T+  TN H +SPVTW +
Sbjct: 22  IHTTTWYVTNAHSVSPVTWDI 42

>RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD|
          Length = 349

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -1

Query: 242 CLLVCRKVGV*IPSRAGVCRCTPLXXXXXFLIYSSTIR*YIEEFMYK-LFHFFSFSV*LC 66
           C L+ +KV         +C   PL      + +SS    Y ++F    LFH FS    +C
Sbjct: 229 CFLLYKKV---------ICWRIPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMC 279

Query: 65  T*PILGKETTS*IVKKGLLFF 3
              I     T+   K G +FF
Sbjct: 280 AFFIATDPVTTSCTKIGKIFF 300

>EPIPL_MOUSE (Q8R0W0) Epiplakin|
          Length = 6548

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 240  ALPVPGNVARDRTHSITSWPCLHSQCIFALSKK 338
            A+ VP N+ R + HS++ W  LHS+ + A  ++
Sbjct: 1460 AMKVPINMGRFQGHSVSLWDLLHSEYVGAEKRR 1492

>YQM4_SCHPO (Q9UU83) Protein P1E11.04c in chromosome III|
          Length = 425

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 169 NSGVQRHTPAREGIHTPTFRQTNKHCLSPVTWRVTAPI 282
           ++     TP  +G++T +   +N   L+P T RV  P+
Sbjct: 10  STATSSQTPQEDGVYTSSLHNSNNPFLAPKTERVADPV 47

>CNTFR_RAT (Q08406) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 DQELGEEKQWSTTAHTSPGRNSHAHLPT 230
           D E+G    WS  AH +P      HL T
Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311

>CNTFR_MOUSE (O88507) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 DQELGEEKQWSTTAHTSPGRNSHAHLPT 230
           D E+G    WS  AH +P      HL T
Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311

>CNTFR_HUMAN (P26992) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 DQELGEEKQWSTTAHTSPGRNSHAHLPT 230
           D E+G    WS  AH +P      HL T
Sbjct: 284 DNEIGTWSDWSVAAHATPWTEEPRHLTT 311

>RK33_PHYPA (Q6YXM3) Chloroplast 50S ribosomal protein L33|
          Length = 66

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 151 KN*EKKNSGVQRHTPAREGIHTPTFRQTNKHC 246
           +N EKK  GV R+T  +   +TPT  +  K C
Sbjct: 21  QNNEKKKLGVSRYTTQKNRRNTPTRLELKKFC 52

>CNTFR_CANFA (Q71DR4) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 DQELGEEKQWSTTAHTSPGRNSHAHLPT 230
           D E+G    WS  AH +P      HL T
Sbjct: 284 DYEIGTWSDWSVAAHATPWTEEPRHLTT 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,860,720
Number of Sequences: 219361
Number of extensions: 956277
Number of successful extensions: 2183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2176
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)