Clone Name | rbart50h07 |
---|---|
Clone Library Name | barley_pub |
>emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 on chromosome Xq22, complete sequence Length = 126263 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 64 gtgcaaagttatactgagaaactgaa 89 |||||||||||||||||||| ||||| Sbjct: 81964 gtgcaaagttatactgagaatctgaa 81989
>emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on chromosome 10 Contains the 5' end of the COPEB gene for core promoter element binding protein (GBF ZF9 Zf9 BCD1 CPBP KLF6), two novel genes and a CpG island, complete sequence Length = 187833 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 aggagaagaaaaacagtggag 178 ||||||||||||||||||||| Sbjct: 5819 aggagaagaaaaacagtggag 5799
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gagaagaaaaacagtggagta 180 ||||||||||||||||||||| Sbjct: 20954186 gagaagaaaaacagtggagta 20954206
>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470G10 Length = 145419 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gagaagaaaaacagtggagta 180 ||||||||||||||||||||| Sbjct: 77658 gagaagaaaaacagtggagta 77678
>dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT05D12, TM0303, complete sequence Length = 123806 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 taggagaagaaaaacagtgga 177 ||||||||||||||||||||| Sbjct: 68807 taggagaagaaaaacagtgga 68827
>ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 mRNA, complete cds Length = 2429 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 atcaagaactaggagaagaa 167 |||||||||||||||||||| Sbjct: 230 atcaagaactaggagaagaa 249
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atcaagaactaggagaagaa 167 |||||||||||||||||||| Sbjct: 93524 atcaagaactaggagaagaa 93505
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atcaagaactaggagaagaa 167 |||||||||||||||||||| Sbjct: 64437 atcaagaactaggagaagaa 64418
>gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170606 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 aaaaagtggaacaacttgta 107 |||||||||||||||||||| Sbjct: 89187 aaaaagtggaacaacttgta 89168
>gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, complete cds Length = 2428 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 atcaagaactaggagaagaa 167 |||||||||||||||||||| Sbjct: 229 atcaagaactaggagaagaa 248
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 1227717 taggagaagtaaaacagtggagta 1227694
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 5256815 taggagaagtaaaacagtggagta 5256792
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaactaggagaagaaaaa 170 |||||||||||||||||||| Sbjct: 1303150 aagaactaggagaagaaaaa 1303131
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 123529 taggagaagtaaaacagtggagta 123506
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 140954 taggagaagtaaaacagtggagta 140931
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 57024 taggagaagtaaaacagtggagta 57001
>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0589E08 Length = 138416 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 55578 taggagaagtaaaacagtggagta 55555
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 taggagaagaaaaacagtggagta 180 ||||||||| |||||||||||||| Sbjct: 94796 taggagaagtaaaacagtggagta 94773 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,668,894 Number of Sequences: 3902068 Number of extensions: 2668894 Number of successful extensions: 50566 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50471 Number of HSP's gapped (non-prelim): 95 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)