ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 o... 44 0.29
2emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on ch... 42 1.2
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
4dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
5dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.2
6ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 ... 40 4.6
7emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, ... 40 4.6
8emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BA... 40 4.6
9gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Can... 40 4.6
10gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, co... 40 4.6
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
13dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 4.6
14dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
15dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
16dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
17dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
18dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6

>emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 on chromosome Xq22, complete
             sequence
          Length = 126263

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 64    gtgcaaagttatactgagaaactgaa 89
             |||||||||||||||||||| |||||
Sbjct: 81964 gtgcaaagttatactgagaatctgaa 81989



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>emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on chromosome 10 Contains
            the 5' end of the COPEB gene for core promoter element
            binding protein (GBF ZF9 Zf9 BCD1 CPBP KLF6), two novel
            genes and a CpG island, complete sequence
          Length = 187833

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 158  aggagaagaaaaacagtggag 178
            |||||||||||||||||||||
Sbjct: 5819 aggagaagaaaaacagtggag 5799



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 160      gagaagaaaaacagtggagta 180
                |||||||||||||||||||||
Sbjct: 20954186 gagaagaaaaacagtggagta 20954206



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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   gagaagaaaaacagtggagta 180
             |||||||||||||||||||||
Sbjct: 77658 gagaagaaaaacagtggagta 77678



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>dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT05D12, TM0303,
             complete sequence
          Length = 123806

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   taggagaagaaaaacagtgga 177
             |||||||||||||||||||||
Sbjct: 68807 taggagaagaaaaacagtgga 68827



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>ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 mRNA, complete cds
          Length = 2429

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 atcaagaactaggagaagaa 167
           ||||||||||||||||||||
Sbjct: 230 atcaagaactaggagaagaa 249



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>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58
          Length = 193550

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atcaagaactaggagaagaa 167
             ||||||||||||||||||||
Sbjct: 93524 atcaagaactaggagaagaa 93505



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>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project)
          Length = 139316

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atcaagaactaggagaagaa 167
             ||||||||||||||||||||
Sbjct: 64437 atcaagaactaggagaagaa 64418



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>gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170606

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aaaaagtggaacaacttgta 107
             ||||||||||||||||||||
Sbjct: 89187 aaaaagtggaacaacttgta 89168



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>gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, complete cds
          Length = 2428

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 atcaagaactaggagaagaa 167
           ||||||||||||||||||||
Sbjct: 229 atcaagaactaggagaagaa 248



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 157     taggagaagaaaaacagtggagta 180
               ||||||||| ||||||||||||||
Sbjct: 1227717 taggagaagtaaaacagtggagta 1227694



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 157     taggagaagaaaaacagtggagta 180
               ||||||||| ||||||||||||||
Sbjct: 5256815 taggagaagtaaaacagtggagta 5256792



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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     aagaactaggagaagaaaaa 170
               ||||||||||||||||||||
Sbjct: 1303150 aagaactaggagaagaaaaa 1303131



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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1715_A07
          Length = 130907

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    taggagaagaaaaacagtggagta 180
              ||||||||| ||||||||||||||
Sbjct: 123529 taggagaagtaaaacagtggagta 123506



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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1203H11
          Length = 156561

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    taggagaagaaaaacagtggagta 180
              ||||||||| ||||||||||||||
Sbjct: 140954 taggagaagtaaaacagtggagta 140931



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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0073J19
          Length = 165174

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   taggagaagaaaaacagtggagta 180
             ||||||||| ||||||||||||||
Sbjct: 57024 taggagaagtaaaacagtggagta 57001



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>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0589E08
          Length = 138416

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   taggagaagaaaaacagtggagta 180
             ||||||||| ||||||||||||||
Sbjct: 55578 taggagaagtaaaacagtggagta 55555



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>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091F23
          Length = 147699

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   taggagaagaaaaacagtggagta 180
             ||||||||| ||||||||||||||
Sbjct: 94796 taggagaagtaaaacagtggagta 94773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,668,894
Number of Sequences: 3902068
Number of extensions: 2668894
Number of successful extensions: 50566
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50471
Number of HSP's gapped (non-prelim): 95
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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