ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13 ... 31 0.83
2YR297_MIMIV (Q5UPY3) Hypothetical protein R297 28 4.1
3OXGR1_HUMAN (Q96P68) 2-oxoglutarate receptor 1 (Alpha-ketoglutar... 28 5.4
4HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic s... 28 7.0
5Y241_MYCGE (P47483) Hypothetical protein MG241 28 7.0

>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13|
           (Nucleotide-binding oligomerization domain protein 14)
          Length = 1043

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +2

Query: 98  LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 271
           LEI   +  + ++HA     W      LV+  NLH    +N     ++  G     K  R
Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754

Query: 272 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 355
            +  KLT K  TP W +  L+   Q NS
Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782



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>YR297_MIMIV (Q5UPY3) Hypothetical protein R297|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 257 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 364
           ++Y+ NQP++L T+   P ++  +  + +  N +FY
Sbjct: 80  KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115



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>OXGR1_HUMAN (Q96P68) 2-oxoglutarate receptor 1 (Alpha-ketoglutarate receptor 1)|
           (G-protein coupled receptor 80) (G-protein coupled
           receptor 99) (P2Y purinoceptor 15) (P2Y-like nucleotide
           receptor) (P2Y-like GPCR)
          Length = 337

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 175 FSLFLPYVFYVCMDLMLYCVVSCDLQLISLYLDLAEEVACS 53
           F+L+   +F  C  +  YCV+   +   S++      VAC+
Sbjct: 115 FNLYSSILFLTCFSIFRYCVIIHPMSCFSIHKTRCAVVACA 155



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>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC|
           2.3.1.48) (HAT B)
          Length = 467

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 302 TTPRWHIYHLLDKKQQNSD 358
           T P WH+Y L+ KK++  D
Sbjct: 203 TDPDWHLYLLIQKKEEKED 221



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>Y241_MYCGE (P47483) Hypothetical protein MG241|
          Length = 620

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 257 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 370
           +KYS NQP KL+   T     +Y L  K++Q    +DF+F+
Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,810,302
Number of Sequences: 219361
Number of extensions: 960471
Number of successful extensions: 1830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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