Clone Name | rbart50h05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093C11, full insert sequence Length = 1425 Score = 182 bits (92), Expect = 6e-43 Identities = 191/224 (85%) Strand = Plus / Minus Query: 166 ctccaactggagatcttatatgccgatcttcttctggtacttctggatttgattcaagaa 225 ||||||||| ||| ||||||| || |||| ||||| | |||||||||||||||||||||| Sbjct: 1143 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 1084 Query: 226 gagccacgtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagta 285 | ||| |||||||| ||||| || || ||||||||||| || || || ||||| | ||| Sbjct: 1083 tatccatgtcatcatcacatggggagcaatcctgacacagtacacagggaagccagtgta 1024 Query: 286 gaacttaaatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgta 345 |||||| ||||||||||| |||| | ||| | |||||||||||||||||| || ||||| Sbjct: 1023 gaacttgaatgggccaccgctcttgaaggtcttcatggcacagtccaaagaaccggtgta 964 Query: 346 tgggtactttccagtggcatcaggttgcatcttctgaatttgtg 389 |||||||| ||| |||||||||||||||||||||| ||||||| Sbjct: 963 cgggtacttcccactggcatcaggttgcatcttctggatttgtg 920
>dbj|AK059612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F09, full insert sequence Length = 1359 Score = 182 bits (92), Expect = 6e-43 Identities = 191/224 (85%) Strand = Plus / Minus Query: 166 ctccaactggagatcttatatgccgatcttcttctggtacttctggatttgattcaagaa 225 ||||||||| ||| ||||||| || |||| ||||| | |||||||||||||||||||||| Sbjct: 1069 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 1010 Query: 226 gagccacgtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagta 285 | ||| |||||||| ||||| || || ||||||||||| || || || ||||| | ||| Sbjct: 1009 tatccatgtcatcatcacatggggagcaatcctgacacagtacacagggaagccagtgta 950 Query: 286 gaacttaaatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgta 345 |||||| ||||||||||| |||| | ||| | |||||||||||||||||| || ||||| Sbjct: 949 gaacttgaatgggccaccgctcttgaaggtcttcatggcacagtccaaagaaccggtgta 890 Query: 346 tgggtactttccagtggcatcaggttgcatcttctgaatttgtg 389 |||||||| ||| |||||||||||||||||||||| ||||||| Sbjct: 889 cgggtacttcccactggcatcaggttgcatcttctggatttgtg 846
>dbj|AK103990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B11, full insert sequence Length = 871 Score = 174 bits (88), Expect = 1e-40 Identities = 190/224 (84%) Strand = Plus / Minus Query: 166 ctccaactggagatcttatatgccgatcttcttctggtacttctggatttgattcaagaa 225 ||||||||| ||| ||||||| || |||| ||||| | |||||||||||||||||||||| Sbjct: 590 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 531 Query: 226 gagccacgtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagta 285 | ||| |||||||| ||||| || || |||||| |||| || || || ||||| | ||| Sbjct: 530 tatccatgtcatcatcacatggggagcaatcctggcacagtacacagggaagccagtgta 471 Query: 286 gaacttaaatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgta 345 |||||| ||||||||||| |||| | ||| | |||||||||||||||||| || ||||| Sbjct: 470 gaacttgaatgggccaccgctcttgaaggtcttcatggcacagtccaaagaaccggtgta 411 Query: 346 tgggtactttccagtggcatcaggttgcatcttctgaatttgtg 389 |||||||| ||| |||||||||||||||||||||| ||||||| Sbjct: 410 cgggtacttcccactggcatcaggttgcatcttctggatttgtg 367
>gb|BT016874.1| Zea mays clone Contig707 mRNA sequence Length = 1051 Score = 159 bits (80), Expect = 8e-36 Identities = 176/208 (84%) Strand = Plus / Plus Query: 182 tatatgccgatcttcttctggtacttctggatttgattcaagaagagccacgtcatcatg 241 ||||||||||||||||||| |||||||||| ||||||||||| | ||| ||||||||| Sbjct: 350 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 409 Query: 242 acatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaaatgggcca 301 ||||| || || |||||||| || || || || || || | ||||||||| ||||||||| Sbjct: 410 acatggggtgcaatcctgacgcagtacaccgggaaaccagtgtagaacttgaatgggcca 469 Query: 302 ccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtactttccagtg 361 || |||| | ||| | || ||||||||||||||||| |||||||||||||| ||| | Sbjct: 470 ccgctcttgaaggtcttcacagcacagtccaaagaccctgtgtatgggtacttgccattc 529 Query: 362 gcatcaggttgcatcttctgaatttgtg 389 ||||||||||||||||||||||| |||| Sbjct: 530 gcatcaggttgcatcttctgaatctgtg 557
>gb|BT016861.1| Zea mays clone Contig694 mRNA sequence Length = 1412 Score = 159 bits (80), Expect = 8e-36 Identities = 176/208 (84%) Strand = Plus / Plus Query: 182 tatatgccgatcttcttctggtacttctggatttgattcaagaagagccacgtcatcatg 241 ||||||||||||||||||| |||||||||| ||||||||||| | ||| ||||||||| Sbjct: 354 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 413 Query: 242 acatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaaatgggcca 301 ||||| || || |||||||| || || || || || || | ||||||||| ||||||||| Sbjct: 414 acatggggtgcaatcctgacgcagtacaccgggaaaccagtgtagaacttgaatgggcca 473 Query: 302 ccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtactttccagtg 361 || |||| | ||| | || ||||||||||||||||| |||||||||||||| ||| | Sbjct: 474 ccgctcttgaaggtcttcacagcacagtccaaagaccctgtgtatgggtacttgccatta 533 Query: 362 gcatcaggttgcatcttctgaatttgtg 389 ||||||||||||||||||||||| |||| Sbjct: 534 gcatcaggttgcatcttctgaatctgtg 561
>gb|AY103946.1| Zea mays PCO074099 mRNA sequence Length = 1530 Score = 159 bits (80), Expect = 8e-36 Identities = 176/208 (84%) Strand = Plus / Minus Query: 182 tatatgccgatcttcttctggtacttctggatttgattcaagaagagccacgtcatcatg 241 ||||||||||||||||||| |||||||||| ||||||||||| | ||| ||||||||| Sbjct: 1089 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 1030 Query: 242 acatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaaatgggcca 301 ||||| || || |||||||| || || || || || || | ||||||||| ||||||||| Sbjct: 1029 acatggggtgcaatcctgacgcagtacaccgggaaaccagtgtagaacttgaatgggcca 970 Query: 302 ccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtactttccagtg 361 || |||| | ||| | || ||||||||||||||||| |||||||||||||| ||| | Sbjct: 969 ccgctcttgaaggtcttcacagcacagtccaaagaccctgtgtatgggtacttgccattc 910 Query: 362 gcatcaggttgcatcttctgaatttgtg 389 ||||||||||||||||||||||| |||| Sbjct: 909 gcatcaggttgcatcttctgaatctgtg 882
>gb|AY644469.1| Saccharum officinarum mitochondrial 2-oxoglutarate/malate translocator mRNA, complete cds; nuclear gene for mitochondrial product Length = 1416 Score = 143 bits (72), Expect = 5e-31 Identities = 174/208 (83%) Strand = Plus / Minus Query: 182 tatatgccgatcttcttctggtacttctggatttgattcaagaagagccacgtcatcatg 241 |||||||| |||||||||| ||||||||| ||||||||||| | ||| ||||||||| Sbjct: 1091 tatatgccaatcttcttctcaatcttctggatctgattcaagaatatccaggtcatcatg 1032 Query: 242 acatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaaatgggcca 301 ||||| || || ||||||||||| || || || || || | ||||||||| ||||| ||| Sbjct: 1031 acatggggtgcaatcctgacacagtacacggggaaaccagtgtagaacttgaatggacca 972 Query: 302 ccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtactttccagtg 361 || |||| | ||| | || |||||||||||||||||| ||||| |||||||| ||| | Sbjct: 971 ccgctcttgaaggtcttcacggcacagtccaaagaccctgtgtacgggtacttgccattc 912 Query: 362 gcatcaggttgcatcttctgaatttgtg 389 ||||||||||||||||||||||| |||| Sbjct: 911 gcatcaggttgcatcttctgaatctgtg 884
>dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132N13, full insert sequence Length = 1354 Score = 121 bits (61), Expect = 2e-24 Identities = 133/157 (84%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagtagaactta 292 ||||||||| |||| || || ||||||||||| || || |||||||| | |||||||||| Sbjct: 1035 gtcatcatggcatgtggtgcaatcctgacacagtacacaggaaagccagtgtagaactta 976 Query: 293 aatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtac 352 |||||||| ||| |||||| ||| | ||||||||| || | ||||||||||||||| ||| Sbjct: 975 aatgggcctccactcttcaaggtcttcatggcacaatcaagagacccagtgtatggatac 916 Query: 353 tttccagtggcatcaggttgcatcttctgaatttgtg 389 || || | ||||||||| |||||||| ||||| |||| Sbjct: 915 ttcccggaggcatcaggctgcatcttttgaatctgtg 879
>dbj|AK058511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G08, full insert sequence Length = 1246 Score = 121 bits (61), Expect = 2e-24 Identities = 133/157 (84%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagtagaactta 292 ||||||||| |||| || || ||||||||||| || || |||||||| | |||||||||| Sbjct: 918 gtcatcatggcatgtggtgcaatcctgacacagtacacaggaaagccagtgtagaactta 859 Query: 293 aatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtac 352 |||||||| ||| |||||| ||| | ||||||||| || | ||||||||||||||| ||| Sbjct: 858 aatgggcctccactcttcaaggtcttcatggcacaatcaagagacccagtgtatggatac 799 Query: 353 tttccagtggcatcaggttgcatcttctgaatttgtg 389 || || | ||||||||| |||||||| ||||| |||| Sbjct: 798 ttcccggaggcatcaggctgcatcttttgaatctgtg 762
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 119 bits (60), Expect = 7e-24 Identities = 117/136 (86%) Strand = Plus / Minus Query: 254 atcctgacacaatatactggaaagccggagtagaacttaaatgggccaccagtcttcatg 313 ||||||||||| || || || ||||| | ||||||||| ||||||||||| |||| | | Sbjct: 53130 atcctgacacagtacacagggaagccagtgtagaacttgaatgggccaccgctcttgaag 53071 Query: 314 gtttgcatggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgc 373 || | |||||||||||||||||| || ||||| |||||||| ||| |||||||||||||| Sbjct: 53070 gtcttcatggcacagtccaaagaaccggtgtacgggtacttcccactggcatcaggttgc 53011 Query: 374 atcttctgaatttgtg 389 |||||||| ||||||| Sbjct: 53010 atcttctggatttgtg 52995 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 166 ctccaactggagatcttatatgccgatcttcttctggtacttctggatttgattcaagaa 225 ||||||||| ||| ||||||| || |||| ||||| | |||||||||||||||||||||| Sbjct: 53309 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 53250 Query: 226 gagccacgtcatc 238 | ||| |||||| Sbjct: 53249 tatccatgtcatc 53237
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 119 bits (60), Expect = 7e-24 Identities = 117/136 (86%) Strand = Plus / Minus Query: 254 atcctgacacaatatactggaaagccggagtagaacttaaatgggccaccagtcttcatg 313 ||||||||||| || || || ||||| | ||||||||| ||||||||||| |||| | | Sbjct: 6615076 atcctgacacagtacacagggaagccagtgtagaacttgaatgggccaccgctcttgaag 6615017 Query: 314 gtttgcatggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgc 373 || | |||||||||||||||||| || ||||| |||||||| ||| |||||||||||||| Sbjct: 6615016 gtcttcatggcacagtccaaagaaccggtgtacgggtacttcccactggcatcaggttgc 6614957 Query: 374 atcttctgaatttgtg 389 |||||||| ||||||| Sbjct: 6614956 atcttctggatttgtg 6614941 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 166 ctccaactggagatcttatatgccgatcttcttctggtacttctggatttgattcaagaa 225 ||||||||| ||| ||||||| || |||| ||||| | |||||||||||||||||||||| Sbjct: 6615255 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 6615196 Query: 226 gagccacgtcatc 238 | ||| |||||| Sbjct: 6615195 tatccatgtcatc 6615183
>dbj|D45075.1|PNI2OMTC Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 2371 Score = 113 bits (57), Expect = 4e-22 Identities = 150/181 (82%) Strand = Plus / Minus Query: 204 acttctggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacac 263 |||||||||| ||||||||||| | ||| |||| |||||||||||| || ||||| |||| Sbjct: 2041 acttctggatctgattcaagaatatccaggtcaacatgacatgcggagcaatcctcacac 1982 Query: 264 aatatactggaaagccggagtagaacttaaatgggccaccagtcttcatggtttgcatgg 323 | || || ||||| |||| |||||||||||| ||||| ||| |||| | ||| | ||| Sbjct: 1981 agtagacaggaaacccggtgtagaacttaaacgggcctccactctttaaggtcttcataa 1922 Query: 324 cacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgcatcttctgaa 383 | ||||| | || |||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 1921 cgcagtcaagggatccagtgtacgggtacttcccattggcatcaggctgcatcttctgaa 1862 Query: 384 t 384 | Sbjct: 1861 t 1861
>dbj|D45074.1|PNI2OMTB Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1783 Score = 113 bits (57), Expect = 4e-22 Identities = 150/181 (82%) Strand = Plus / Minus Query: 204 acttctggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacac 263 |||||||||| ||||||||||| | ||| |||| ||||||||| || | ||||| |||| Sbjct: 1494 acttctggatctgattcaagaatatccaagtcaacatgacatgtggaccaatcctcacac 1435 Query: 264 aatatactggaaagccggagtagaacttaaatgggccaccagtcttcatggtttgcatgg 323 | || || ||||| |||| |||||||||||| ||||| ||| |||| | ||| | |||| Sbjct: 1434 agtagacaggaaacccggtgtagaacttaaacgggcctccactctttaaggtcttcatga 1375 Query: 324 cacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgcatcttctgaa 383 | ||||| | ||| |||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 1374 cgcagtcaagagatccagtgtacgggtacttcccattggcatcaggctgcatcttctgaa 1315 Query: 384 t 384 | Sbjct: 1314 t 1314
>dbj|D45073.1|PNI2OMTA Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1446 Score = 113 bits (57), Expect = 4e-22 Identities = 150/181 (82%) Strand = Plus / Minus Query: 204 acttctggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacac 263 |||||||||| ||||||||||| | ||| |||| ||||||||| || | ||||| |||| Sbjct: 1021 acttctggatctgattcaagaatatccaagtcaacatgacatgtggaccaatcctcacac 962 Query: 264 aatatactggaaagccggagtagaacttaaatgggccaccagtcttcatggtttgcatgg 323 | || || ||||| |||| |||||||||||| ||||| ||| |||| | ||| | |||| Sbjct: 961 agtagacaggaaacccggtgtagaacttaaacgggcctccactctttaaggtcttcatga 902 Query: 324 cacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgcatcttctgaa 383 | ||||| | ||| |||||||| |||||||| ||| |||||||||| ||||||||||||| Sbjct: 901 cgcagtcaagagatccagtgtacgggtacttcccattggcatcaggctgcatcttctgaa 842 Query: 384 t 384 | Sbjct: 841 t 841
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 111 bits (56), Expect = 2e-21 Identities = 116/136 (85%) Strand = Plus / Minus Query: 254 atcctgacacaatatactggaaagccggagtagaacttaaatgggccaccagtcttcatg 313 ||||||||||| || || |||||||| | |||||||||||||||||| ||| |||||| | Sbjct: 82479 atcctgacacagtacacaggaaagccagtgtagaacttaaatgggcctccactcttcaag 82420 Query: 314 gtttgcatggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgc 373 || | ||||||||| || | ||||||||||||||| ||||| || | ||||||||| ||| Sbjct: 82419 gtcttcatggcacaatcaagagacccagtgtatggatacttcccggaggcatcaggctgc 82360 Query: 374 atcttctgaatttgtg 389 ||||| ||||| |||| Sbjct: 82359 atcttttgaatctgtg 82344
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 2e-21 Identities = 116/136 (85%) Strand = Plus / Minus Query: 254 atcctgacacaatatactggaaagccggagtagaacttaaatgggccaccagtcttcatg 313 ||||||||||| || || |||||||| | |||||||||||||||||| ||| |||||| | Sbjct: 13366126 atcctgacacagtacacaggaaagccagtgtagaacttaaatgggcctccactcttcaag 13366067 Query: 314 gtttgcatggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgc 373 || | ||||||||| || | ||||||||||||||| ||||| || | ||||||||| ||| Sbjct: 13366066 gtcttcatggcacaatcaagagacccagtgtatggatacttcccggaggcatcaggctgc 13366007 Query: 374 atcttctgaatttgtg 389 ||||| ||||| |||| Sbjct: 13366006 atcttttgaatctgtg 13365991
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 2e-21 Identities = 116/136 (85%) Strand = Plus / Minus Query: 254 atcctgacacaatatactggaaagccggagtagaacttaaatgggccaccagtcttcatg 313 ||||||||||| || || |||||||| | |||||||||||||||||| ||| |||||| | Sbjct: 13446305 atcctgacacagtacacaggaaagccagtgtagaacttaaatgggcctccactcttcaag 13446246 Query: 314 gtttgcatggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgc 373 || | ||||||||| || | ||||||||||||||| ||||| || | ||||||||| ||| Sbjct: 13446245 gtcttcatggcacaatcaagagacccagtgtatggatacttcccggaggcatcaggctgc 13446186 Query: 374 atcttctgaatttgtg 389 ||||| ||||| |||| Sbjct: 13446185 atcttttgaatctgtg 13446170
>gb|AF010583.1|AF010583 Oryza sativa 2-oxoglutarate/malate translocator mRNA, partial cds Length = 949 Score = 89.7 bits (45), Expect = 6e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 234 tcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaa 293 |||||||| |||| || || ||||||||||| || || ||||| || | || ||||||| Sbjct: 604 tcatcatggcatgtggtgcaatcctgacacagtacacaggaaacccagtgttaaacttaa 545 Query: 294 atgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtact 353 |||||| ||| |||||| ||||| ||||||||| || | ||||||||||||||| |||| Sbjct: 544 atgggcgtccactcttcaaggttttcatggcacaatcaagagacccagtgtatggatact 485 Query: 354 ttccagtggcatcaggttgcatctt 378 | || | ||||||||| |||||||| Sbjct: 484 tcccggaggcatcaggctgcatctt 460
>emb|AJ311779.1|NTA311779 Nicotiana tabacum partial mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc4 gene) Length = 908 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 205 cttctggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacaca 264 |||||||||||| || | ||| | |||||||||||||||||| ||||| ||||| ||||| Sbjct: 658 cttctggatttggttaaggaatatccacgtcatcatgacatgaggggcaatcctaacaca 599 Query: 265 atatactggaaa 276 |||||||||||| Sbjct: 598 atatactggaaa 587
>gb|AY700673.1| Helianthus tuberosus putative dicarboxylate/tricarboxylate carrier mRNA, partial cds Length = 669 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Minus Query: 235 catcatgacatgcggggcgatcctgacacaatatactggaaagccggagtagaacttaaa 294 ||||||||| || || |||||||| ||||||||||||||||| || | |||||||| || Sbjct: 669 catcatgacgtggggagcgatcctaacacaatatactggaaatcctgtatagaacttgaa 610 Query: 295 tgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtactt 354 || ||||||| ||| | ||||| ||||||||| |||| ||| || ||||| || || || Sbjct: 609 gggcccaccagacttgagggttttcatggcacaatccatagatcctgtgtacggatattt 550 Query: 355 tccagtggcatcaggttgcat 375 ||| | |||||||| ||||| Sbjct: 549 tcccgcagcatcaggctgcat 529
>gb|AY428798.1| Citrus junos dicarboxylate/tricarboxylate carrier (dtc) mRNA, complete cds; mitochondrial Length = 1503 Score = 73.8 bits (37), Expect = 4e-10 Identities = 127/157 (80%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaagccggagtagaactta 292 |||||||||||||| || || |||| ||||| || || || || || | ||| || || Sbjct: 1320 gtcatcatgacatgaggagcaatccgaacacagtacacagggaaaccagtgtaaaatttg 1261 Query: 293 aatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagtgtatgggtac 352 ||||| ||||||| ||| | ||||| |||||||||||||| ||| || |||||||| ||| Sbjct: 1260 aatggtccaccagccttgagggttttcatggcacagtccatagagcctgtgtatggatac 1201 Query: 353 tttccagtggcatcaggttgcatcttctgaatttgtg 389 ||||| ||||| |||||||| ||||||||||||| Sbjct: 1200 tttccttgagcatctggttgcattttctgaatttgtg 1164
>emb|AJ311778.1|NTA311778 Nicotiana tabacum mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc3 gene) Length = 1144 Score = 71.9 bits (36), Expect = 1e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 205 cttctggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacaca 264 |||||||||||| || | ||| | |||||||||||||||||| || || ||||| ||||| Sbjct: 903 cttctggatttggttaaggaatatccacgtcatcatgacatgaggcgcaatcctaacaca 844 Query: 265 atatactggaaa 276 |||||||||||| Sbjct: 843 atatactggaaa 832
>gb|BT013008.1| Lycopersicon esculentum clone 114243R, mRNA sequence Length = 1356 Score = 69.9 bits (35), Expect = 6e-09 Identities = 101/123 (82%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactggaaagccgga 282 ||||| ||| |||||||| ||||| ||||| ||||| ||||||||||||||||| || | Sbjct: 975 gaagatccaagtcatcataacatgaggggcaatcctaacacaatatactggaaatccagt 916 Query: 283 gtagaacttaaatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagt 342 |||||| || || || || || ||||||| || | ||||||||| || ||||| ||||| Sbjct: 915 gtagaatttgaagggtcctcctgtcttcaaagtcttcatggcacaatcgaaagaaccagt 856 Query: 343 gta 345 ||| Sbjct: 855 gta 853
>gb|DQ056436.1| Lycopersicon esculentum oxoglutarate/malate translocator (ACI36) mRNA, complete cds Length = 1339 Score = 69.9 bits (35), Expect = 6e-09 Identities = 101/123 (82%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactggaaagccgga 282 ||||| ||| |||||||| ||||| ||||| ||||| ||||||||||||||||| || | Sbjct: 879 gaagatccaagtcatcataacatgaggggcaatcctaacacaatatactggaaatccagt 820 Query: 283 gtagaacttaaatgggccaccagtcttcatggtttgcatggcacagtccaaagacccagt 342 |||||| || || || || || ||||||| || | ||||||||| || ||||| ||||| Sbjct: 819 gtagaatttgaagggtcctcctgtcttcaaagtcttcatggcacaatcgaaagaaccagt 760 Query: 343 gta 345 ||| Sbjct: 759 gta 757
>gb|AC148177.13| Medicago truncatula clone mth2-4c9, complete sequence Length = 117329 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 322 ggcacagtccaaagacccagtgtatgggtactttccagtggcatcaggttgcatcttctg 381 ||||||||| | ||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct: 12302 ggcacagtcaagagaaccagtgtatgggtattttccttcagcatcaggttgcatcttctg 12243 Query: 382 aatttgtg 389 ||| |||| Sbjct: 12242 aatctgtg 12235
>emb|AJ299250.1|NTA299250 Nicotiana tabacum mRNA for mitochondrial 2-oxoglutarate/malate carrier (momc1 gene) Length = 1297 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaagccgg 281 |||||||| ||||| || || ||||| ||||||||||||||||| |||| Sbjct: 915 gtcatcataacatgaggagcaatcctaacacaatatactggaaatccgg 867
>emb|AJ311777.1|NTA311777 Nicotiana tabacum partial mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc2 gene) Length = 1193 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaagccgg 281 |||||||| ||||| || || ||||| ||||||||||||||||| |||| Sbjct: 836 gtcatcataacatgaggagcaatcctaacacaatatactggaaatccgg 788
>emb|X99853.1|STOXMATR S.tuberosum mRNA for oxoglutarate malate translocator Length = 1398 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaa 276 |||||||| ||||| ||||| ||||| | ||||||||||||||| Sbjct: 879 gtcatcataacatgaggggcaatcctaatacaatatactggaaa 836
>emb|AJ311776.1|NTA311776 Nicotiana tabacum mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc1 gene) Length = 1230 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 233 gtcatcatgacatgcggggcgatcctgacacaatatactggaaa 276 |||||||| ||||| || || ||||| ||||||||||||||||| Sbjct: 899 gtcatcataacatgaggagcaatcctaacacaatatactggaaa 856
>ref|NM_121981.3| Arabidopsis thaliana binding / oxidative phosphorylation uncoupler AT5G19760 mRNA, complete cds Length = 1521 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 1001 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 951
>gb|AY056307.1| Arabidopsis thaliana putative oxoglutarate/malate translocator protein (At5g19760) mRNA, complete cds Length = 928 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 855 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 805
>gb|AF360153.1| Arabidopsis thaliana putative oxoglutarate/malate translocator protein (At5g19760) mRNA, complete cds Length = 1219 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 964 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 914
>emb|BX830426.1|CNS0A1DP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1157 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 949 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 899
>emb|BX831268.1|CNS0A0UC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS73ZB11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1270 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 950 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 900
>emb|BX831238.1|CNS0A0TV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1160 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 949 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 899
>gb|AY085901.1| Arabidopsis thaliana clone 19510 mRNA, complete sequence Length = 1166 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 964 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 914
>emb|AJ311780.1|ATH311780 Arabidopsis thaliana mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc gene) Length = 1192 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Minus Query: 223 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactgg 273 ||||| ||| ||||||||||| || ||||| ||||||||||| || ||||| Sbjct: 948 gaagatccatgtcatcatgacgtgaggggcaatcctgacacagtaaactgg 898
>emb|AL645798.2| Zebrafish DNA sequence from clone BUSM1-227H09 in linkage group 12 Contains the hoxb8b, hoxb6b, hoxb5b and hoxb1b genes, a novel hox pseudogene, and part of a novel gene for an SRC-associated adaptor protein (SKAP55 homologue), complete sequence Length = 80318 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 agtgtatgggtactttccagtg 361 |||||||||||||||||||||| Sbjct: 24312 agtgtatgggtactttccagtg 24291
>emb|BX001014.6| Zebrafish DNA sequence from clone DKEY-11C5 in linkage group 12, complete sequence Length = 193523 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 agtgtatgggtactttccagtg 361 |||||||||||||||||||||| Sbjct: 41782 agtgtatgggtactttccagtg 41761
>emb|CR855222.6| Zebrafish DNA sequence from clone CH211-265N9 in linkage group 12, complete sequence Length = 140480 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 agtgtatgggtactttccagtg 361 |||||||||||||||||||||| Sbjct: 16457 agtgtatgggtactttccagtg 16478
>gb|AC139934.9| Mus musculus chromosome 12, clone RP23-39G14, complete sequence Length = 312488 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 gtgattatgtgattattgtaa 33 ||||||||||||||||||||| Sbjct: 23828 gtgattatgtgattattgtaa 23848
>gb|AC125451.7| Mus musculus chromosome 12, clone RP23-41O6, complete sequence Length = 236838 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gtgattatgtgattattgtaa 33 ||||||||||||||||||||| Sbjct: 121233 gtgattatgtgattattgtaa 121213
>gb|AC139746.15| Medicago truncatula clone mth2-17b20, complete sequence Length = 118157 Score = 42.1 bits (21), Expect = 1.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 338 ccagtgtatgggtactttccagtggcatcaggttgcatcttctgaattt 386 ||||||||||| || || || || |||||||||||||||||| ||||| Sbjct: 84131 ccagtgtatggatatttccctttgtcatcaggttgcatcttcttaattt 84179
>emb|BX510646.5| Zebrafish DNA sequence from clone CH211-221B16 in linkage group 9, complete sequence Length = 200321 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 atgtgattatgtgattattgt 31 ||||||||||||||||||||| Sbjct: 79993 atgtgattatgtgattattgt 80013
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 taaaactctgtctaccaaaaa 101 ||||||||||||||||||||| Sbjct: 161118 taaaactctgtctaccaaaaa 161098
>gb|AC127565.5| Mus musculus BAC clone RP24-292K9 from chromosome 7, complete sequence Length = 188650 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 taatgtgattatgtgattat 28 |||||||||||||||||||| Sbjct: 26877 taatgtgattatgtgattat 26858
>gb|AC120406.27| Mus musculus chromosome 12, clone RP24-418L10, complete sequence Length = 198624 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ctctgtctaccaaaaacaac 105 |||||||||||||||||||| Sbjct: 67519 ctctgtctaccaaaaacaac 67500
>gb|AC147358.2| Xenopus tropicalis clone CH216-71J8, complete sequence Length = 170238 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 taatgtgattatgtgattattgta 32 ||||||||| |||||||||||||| Sbjct: 116396 taatgtgatgatgtgattattgta 116419
>gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete sequence Length = 159658 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 taatgtgattatgtgattattgta 32 ||||||||| |||||||||||||| Sbjct: 134591 taatgtgatgatgtgattattgta 134568
>gb|BC074291.1| Xenopus laevis MGC84082 protein, mRNA (cDNA clone MGC:84082 IMAGE:6949291), complete cds Length = 2245 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 ataatgtgattatgtgattattgtaaca 35 |||||||||| ||||||||||| ||||| Sbjct: 1661 ataatgtgataatgtgattattataaca 1688
>gb|BC075192.1| Xenopus laevis cDNA clone IMAGE:7007980, partial cds Length = 863 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cttctggtacttctggattt 215 |||||||||||||||||||| Sbjct: 390 cttctggtacttctggattt 409
>ref|XM_867954.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 1 (LOC534005), mRNA Length = 6330 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagatgcaaagctgctgaaa 130 |||||||||||||||||||| Sbjct: 1656 gagatgcaaagctgctgaaa 1637
>ref|XM_881052.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 3 (LOC534005), mRNA Length = 5013 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagatgcaaagctgctgaaa 130 |||||||||||||||||||| Sbjct: 388 gagatgcaaagctgctgaaa 369
>ref|XM_881032.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 2 (LOC534005), mRNA Length = 4872 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagatgcaaagctgctgaaa 130 |||||||||||||||||||| Sbjct: 388 gagatgcaaagctgctgaaa 369
>gb|AC104880.13| Mus musculus chromosome 12, clone RP23-141H24, complete sequence Length = 206848 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ctctgtctaccaaaaacaac 105 |||||||||||||||||||| Sbjct: 28075 ctctgtctaccaaaaacaac 28094
>emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 on chromosome 3, complete sequence Length = 56728 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 6 aaataatgtgattatgtgattattgtaa 33 |||||||||||||||| || |||||||| Sbjct: 25246 aaataatgtgattatgagagtattgtaa 25219
>ref|XM_531921.2| PREDICTED: Canis familiaris similar to jumonji domain containing 1B (LOC474695), mRNA Length = 6117 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagatgcaaagctgctgaaa 130 |||||||||||||||||||| Sbjct: 1732 gagatgcaaagctgctgaaa 1713
>emb|BX005169.18| Zebrafish DNA sequence from clone CH211-81D10 in linkage group 14, complete sequence Length = 164868 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aataatgtgattatgtgatt 26 |||||||||||||||||||| Sbjct: 12151 aataatgtgattatgtgatt 12170
>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5, complete sequence Length = 227940 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cacagtccaaagacccagtg 343 |||||||||||||||||||| Sbjct: 55788 cacagtccaaagacccagtg 55769
>ref|XM_393176.2| PREDICTED: Apis mellifera similar to GA19712-PA (LOC409678), mRNA Length = 4497 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 atcttcttctggtacttctg 210 |||||||||||||||||||| Sbjct: 2020 atcttcttctggtacttctg 2001
>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265, complete sequence Length = 100864 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cgatcctgacacaatatact 271 |||||||||||||||||||| Sbjct: 91519 cgatcctgacacaatatact 91500 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,765,959 Number of Sequences: 3902068 Number of extensions: 3765959 Number of successful extensions: 93982 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93791 Number of HSP's gapped (non-prelim): 186 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)