>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic|
           region
          Length = 573

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = +1

Query: 118 TTLLQHET------DEQLVPASSLPGDNNKIPIFTLPIASNRP 228
           +T+  HET      D  +V   +  GDNN+IP+   P + NRP
Sbjct: 330 STVNNHETAVPSIKDSGIVQELTALGDNNRIPVLPPPRSPNRP 372

>CEAM5_HUMAN (P06731) Carcinoembryonic antigen-related cell adhesion molecule 5|
           precursor (Carcinoembryonic antigen) (CEA) (Meconium
           antigen 100) (CD66e antigen)
          Length = 702

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 111 TYNYTPPA*N**AASSCQLTTR*QQQNSYLYTANCLKSTRR-HKNTCTYPRRGVDTCQR* 287
           +Y Y  P  N   + SC   +    Q S+L   N  + T+    +  T    G+ TCQ  
Sbjct: 423 SYTYYRPGVN--LSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQAN 480

Query: 288 NLALGHSFST 317
           N A GHS +T
Sbjct: 481 NSASGHSRTT 490

>CP74_LINUS (P48417) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)|
           (Allene oxide synthase) (Hydroperoxide dehydrase)
          Length = 536

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
 Frame = -1

Query: 288 FIADRCRHLGEGMYMYSYVSWS--------I*GNWQCKDRNFVVV 178
           F+ADR   +GEG+ +  YV WS           N QC  ++FVV+
Sbjct: 455 FVADR--FVGEGVKLMEYVMWSNGPETETPSVANKQCAGKDFVVM 497

>VG27_BPML5 (Q05234) Minor tail protein Gp27|
          Length = 336

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 TDEQLVPASSLPGDNNKIPIFTLPIASNRP 228
           TD+ + P  ++PG   K+P F  P   N P
Sbjct: 199 TDQYIFPKWTVPGSTEKVPNFPWPFPPNVP 228

>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 280 SDKTLPLGTVFPRTHRVAHPPG 345
           SD  +P G ++PRTH    PPG
Sbjct: 192 SDIFVPYGYLYPRTHPSEQPPG 213

>GSPJ_KLEPN (P15749) General secretion pathway protein J precursor (Pullulanase|
           secretion protein pulJ)
          Length = 198

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 347 APGGWATRWVRGKTVPKGKVLSLTGVDTSARVCTCILMSPG 225
           A G W   W + +T+P+G  ++LT ++    +    L++PG
Sbjct: 156 ASGRWQDEWQQAQTLPQGLEVTLT-LEPYGEIRRLFLLTPG 195

>EMSY_MOUSE (Q8BMB0) Protein EMSY|
          Length = 1264

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 145 EQLVPASSLPGDNNKIPIFTLPIASNRPGDIRIH---VHTLAEVSTPVSDK-TLPLGTVF 312
           +Q+ P+  LP    K    TLP +SN P  +      + T   V+TP   + T    TV 
Sbjct: 425 QQVQPSKILP----KPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVS 480

Query: 313 PRTHRVAHPPGAA 351
           P   RVA  PGAA
Sbjct: 481 PSLGRVATTPGAA 493

>PTPRS_HUMAN (Q13332) Receptor-type tyrosine-protein phosphatase S precursor (EC|
           3.1.3.48) (R-PTP-S) (Protein-tyrosine phosphatase sigma)
           (R-PTP-sigma)
          Length = 1948

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
 Frame = -2

Query: 326 RWVRGKT-------VPKGK-VLSLTGVDTSARVCTCILMSP-GRFEAIGSVKIGILLLSP 174
           +W++G         +P G+ VL LT V  SA   TC+ MS  G  EA+  + +  L  +P
Sbjct: 277 KWMQGAEDLTPEDDMPVGRNVLELTDVKDSANY-TCVAMSSLGVIEAVAQITVKSLPKAP 335

Query: 173 GSEL 162
           G+ +
Sbjct: 336 GTPM 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,831,188
Number of Sequences: 219361
Number of extensions: 1232675
Number of successful extensions: 2896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2896
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)