ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
17SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Co... 38 0.006
27SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) ... 38 0.008
3ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disint... 30 2.1
4Y1408_METKA (Q8TVI1) UPF0245 protein MK1408 30 2.1
5TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subun... 30 2.1
6ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor A... 29 2.8
7DUS2L_HUMAN (Q9NX74) tRNA-dihydrouridine synthase 2-like (EC 1.-... 29 2.8
8RL10A_CHLRE (Q9SW75) 60S ribosomal protein L10a 29 2.8
9PPDK_RHIME (Q59754) Pyruvate, phosphate dikinase (EC 2.7.9.1) (P... 29 3.6
10G7C_HUMAN (Q9Y334) Protein G7c precursor 29 3.6
11DAPA_MAIZE (P26259) Dihydrodipicolinate synthase, chloroplast pr... 28 4.7
12P73_HUMAN (O15350) Tumor protein p73 (p53-like transcription fac... 28 6.1
13YND4_YEAST (P53963) Hypothetical 69.4 kDa protein in NCE3-HHT2 i... 28 8.0
14YNB8_YEAST (P53976) Hypothetical 69.6 kDa protein in HDA1-PUB1 i... 28 8.0
15INVO_AOTTR (P24708) Involucrin 28 8.0

>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic|
           7S globulin high-kDa subunit; Basic 7S globulin low-kDa
           subunit]
          Length = 427

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 213 WTMNGLSSMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLEFDMAKKRLGF 34
           W ++G   MV  +PG  CL       + G       + +G  Q+E  L+ FD+A+ R+GF
Sbjct: 352 WRISGEDLMVQAQPGVTCLGV-----MNGGMQPRAEITLGARQLEENLVVFDLARSRVGF 406



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>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:|
           Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin
           2 low-kDa subunit]
          Length = 433

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 213 WTMNGLSSMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLEFDMAKKRLGF 34
           W ++G   MV  +PG  CL       + G       V +G  Q+E  L+ FD+A+ R+GF
Sbjct: 358 WRISGEDLMVQAQPGVTCLGV-----MNGGMQPRAEVTLGTRQLEEKLMVFDLARSRVGF 412



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>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 16)
           (ADAM-TS 16) (ADAM-TS16)
          Length = 1222

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 7   ALGEEGQPDEPEP--LLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARR---- 168
           A    G P++P+P    G   L+ G   L  + E   RG+  + D +H + R+ RR    
Sbjct: 30  AAAASGSPEDPQPPPFSGSSWLETGEYDLVSAYEVDHRGDYVSHDIMHYQRRRRRRAVTQ 89

Query: 169 PGLDVHH 189
           PG D  H
Sbjct: 90  PGGDALH 96



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>Y1408_METKA (Q8TVI1) UPF0245 protein MK1408|
          Length = 402

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 192 SMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLE 64
           S+VD+KPG   LA+   E  KGR          G ++E T++E
Sbjct: 367 SVVDLKPGDKVLAYVETEEGKGRHF--------GMEVEETIVE 401



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>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B|
           (Transcription initiation factor TFIID subunit 9-like
           protein) (Transcription-associated factor TAFII31L)
           (Neuronal cell death-related protein 7) (DN-7)
          Length = 251

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 95  PMSTAGAARSRPLTPSIRANARHAVPGLMST---IELSPFMVQFLPPPSVSVTP 247
           P  + GA  S+P TP+I      +VP  ++T   +    F VQ  P  S  V P
Sbjct: 144 PRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKP 197



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>ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor ATF-6 beta|
           (Activating transcription factor 6 beta) (ATF6-beta)
           (cAMP-responsive element-binding protein-like 1) (cAMP
           response element-binding protein-related protein)
           (Creb-rp) (Protein G13
          Length = 703

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 83  IWNPPMSTAGAARSRPLTPSIRANARHAVPGLMSTIELSPFMVQFLPPPSVSVTPGT 253
           +W+ P  + GA +   + PS+  ++  A+P     ++  P ++  +P PS +V P T
Sbjct: 210 LWDVPAPSLGAVQIS-MGPSLDGSSGKALPTRKPPLQPKPVVLTTVPMPSRAVPPST 265



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>DUS2L_HUMAN (Q9NX74) tRNA-dihydrouridine synthase 2-like (EC 1.-.-.-) (hDUS2)|
           (Up-regulated in lung cancer) (URLC8)
          Length = 493

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  LQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARRPG 174
           L +G L  E    H+R+ E P  DP  PR ++  +PG
Sbjct: 436 LPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPG 472



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>RL10A_CHLRE (Q9SW75) 60S ribosomal protein L10a|
          Length = 213

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +1

Query: 19  EGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARRPGLDVHH 189
           EG   +P      VELQ G+ + +P  + R  G V    P  PR R   R G DV H
Sbjct: 18  EGAKTKPRKFQETVELQIGLKNYDPQKDKRFSGSVRL--PFVPRPRMRVRAG-DVKH 71



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>PPDK_RHIME (Q59754) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,|
           orthophosphate dikinase)
          Length = 898

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 122 SRPLTPSIRANARHAVPGLMSTI 190
           +RPL  S+R+ AR ++PG+M T+
Sbjct: 88  NRPLLLSVRSGARASMPGMMDTV 110



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>G7C_HUMAN (Q9Y334) Protein G7c precursor|
          Length = 852

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 1   VAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRER 156
           V  LG    P +P+P   HV L +GV       E    G+VP L+P+ P ER
Sbjct: 637 VTGLGSRANPGDPQPHFSHVIL-RGV------PEGAELGQVP-LEPVGPPER 680



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>DAPA_MAIZE (P26259) Dihydrodipicolinate synthase, chloroplast precursor (EC|
           4.2.1.52) (DHDPS)
          Length = 380

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  PMSTAGAARSRPLTPSIRANARHAVPGLMS 184
           P+S  GAA + P +PS+ A  R    GL S
Sbjct: 15  PVSNGGAATASPSSPSVAARPRRLPSGLQS 44



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>P73_HUMAN (O15350) Tumor protein p73 (p53-like transcription factor)|
           (p53-related protein)
          Length = 636

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +2

Query: 92  PPMSTAGAARSRPLTPSIRANARHAVP--GLMSTIELSPFMV---QFLPPPSVSVTP 247
           PP S+A      P+ P +  N  HAVP  G MS+   +  MV      PPP     P
Sbjct: 435 PPHSSAATPNLGPVGPGMLNNHGHAVPANGEMSSSHSAQSMVSGSHCTPPPPYHADP 491



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>YND4_YEAST (P53963) Hypothetical 69.4 kDa protein in NCE3-HHT2 intergenic|
           region
          Length = 612

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  PSRFLAMSNSSRVFSIWNPPMS 103
           PS   ++S SS V+S WNPP S
Sbjct: 199 PSLTSSVSTSSSVYSSWNPPHS 220



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>YNB8_YEAST (P53976) Hypothetical 69.6 kDa protein in HDA1-PUB1 intergenic|
           region
          Length = 612

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  PSRFLAMSNSSRVFSIWNPPMS 103
           PS   ++S SS V+S WNPP S
Sbjct: 199 PSLTSSVSTSSSVYSSWNPPHS 220



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>INVO_AOTTR (P24708) Involucrin|
          Length = 544

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 28  PDEPEPLLGHVELQQG-VLHLEPSDEHRRRGEVPTLDPLHPR--ERQARRP 171
           P++ E  L  +E Q+G V HLE  +E  +  E     P HP   E+Q   P
Sbjct: 295 PEQQEGQLKQLEEQEGQVKHLEQQEEQLKHLEQQEGQPKHPEQLEKQLEHP 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,320,434
Number of Sequences: 219361
Number of extensions: 591108
Number of successful extensions: 2334
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2330
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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