ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complet... 40 1.6
2gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8,... 40 1.6
3emb|Z98597.1|SPAC17H9 S.pombe chromosome I cosmid c17H9 38 6.2
4gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, comple... 38 6.2
5gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, comp... 38 6.2
6ref|XM_760600.1| Theileria parva strain Muguga chromosome 1 prol... 38 6.2
7emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS finger... 38 6.2
8gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell... 38 6.2
9gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswel... 38 6.2
10dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 38 6.2
11emb|BX470240.8| Zebrafish DNA sequence from clone CH211-92L17 in... 38 6.2
12gb|AC105165.11| Mus musculus chromosome 18, clone RP24-302C24, c... 38 6.2
13gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 ... 38 6.2
14emb|AL109769.5|CNS018OY Human chromosome 14 DNA sequence BAC R-5... 38 6.2

>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence
          Length = 176629

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    aagattagaagtctttattc 86
             ||||||||||||||||||||
Sbjct: 97489 aagattagaagtctttattc 97470



to top

>gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8, complete sequence
          Length = 99108

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   aagattagaagtctttattc 86
            ||||||||||||||||||||
Sbjct: 1414 aagattagaagtctttattc 1433



to top

>emb|Z98597.1|SPAC17H9 S.pombe chromosome I cosmid c17H9
          Length = 38515

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   gaattgatagaaaacgtta 120
             |||||||||||||||||||
Sbjct: 21498 gaattgatagaaaacgtta 21516



to top

>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence
          Length = 208678

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    ttgttccatcttttgacct 34
             |||||||||||||||||||
Sbjct: 10085 ttgttccatcttttgacct 10067



to top

>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence
          Length = 210347

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    ttgttccatcttttgacct 34
             |||||||||||||||||||
Sbjct: 44421 ttgttccatcttttgacct 44439



to top

>ref|XM_760600.1| Theileria parva strain Muguga chromosome 1 prolyl-tRNA synthetase
            (TP01_0166) partial mRNA
          Length = 2087

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 11   atactttgttccatctttt 29
            |||||||||||||||||||
Sbjct: 1837 atactttgttccatctttt 1819



to top

>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 1/10
          Length = 348071

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     cagaatatgtggagcaaaa 57
              |||||||||||||||||||
Sbjct: 245417 cagaatatgtggagcaaaa 245435



to top

>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    agcaaaatcgaaagacaag 69
             |||||||||||||||||||
Sbjct: 45137 agcaaaatcgaaagacaag 45119



to top

>gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 164597

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    agcaaaatcgaaagacaag 69
             |||||||||||||||||||
Sbjct: 31947 agcaaaatcgaaagacaag 31965



to top

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     cagaatatgtggagcaaaa 57
              |||||||||||||||||||
Sbjct: 245416 cagaatatgtggagcaaaa 245434



to top

>emb|BX470240.8| Zebrafish DNA sequence from clone CH211-92L17 in linkage group 4,
             complete sequence
          Length = 100845

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    aaatcgaaagacaagatta 73
             |||||||||||||||||||
Sbjct: 10576 aaatcgaaagacaagatta 10594



to top

>gb|AC105165.11| Mus musculus chromosome 18, clone RP24-302C24, complete sequence
          Length = 186431

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 61    aaagacaagattagaagtcttta 83
             |||||||||||||||| ||||||
Sbjct: 63470 aaagacaagattagaaatcttta 63448



to top

>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
              sequence
          Length = 307657

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     agcaaaatcgaaagacaag 69
              |||||||||||||||||||
Sbjct: 197186 agcaaaatcgaaagacaag 197204



to top

>emb|AL109769.5|CNS018OY Human chromosome 14 DNA sequence BAC R-501E21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161938

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    gaatatgtggagcaaaatc 59
             |||||||||||||||||||
Sbjct: 99187 gaatatgtggagcaaaatc 99205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,088,360
Number of Sequences: 3902068
Number of extensions: 1088360
Number of successful extensions: 67643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67619
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top