ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC004697.3| Arabidopsis thaliana chromosome 2 clone T16B24 ma... 42 0.70
2gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 0.70
3gb|AC159448.1| Trypanosoma brucei chromosome 8 clone RPCI93-4A8,... 40 2.8
4gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 40 2.8
5gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 2.8
6gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, comp... 40 2.8

>gb|AC004697.3| Arabidopsis thaliana chromosome 2 clone T16B24 map CIC10A06, complete
             sequence
          Length = 113950

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    atctcctccacctttttccac 115
             |||||||||||||||||||||
Sbjct: 98902 atctcctccacctttttccac 98922



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 134     atggcgtgatgtgcctgccccgcca 158
               |||||||||||| ||||||||||||
Sbjct: 3798902 atggcgtgatgttcctgccccgcca 3798926



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>gb|AC159448.1| Trypanosoma brucei chromosome 8 clone RPCI93-4A8, complete sequence
          Length = 152185

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    cacaacacgctaatcatctcctcc 103
             |||||||||| |||||||||||||
Sbjct: 10173 cacaacacgccaatcatctcctcc 10196



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>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence
          Length = 148464

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     cacaacacgctaatcatctcctcc 103
              |||||||||| |||||||||||||
Sbjct: 131508 cacaacacgccaatcatctcctcc 131531



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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 80      cacaacacgctaatcatctcctcc 103
               |||||||||| |||||||||||||
Sbjct: 1341731 cacaacacgccaatcatctcctcc 1341754



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>gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, complete sequence
          Length = 161815

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    catctcctccacctttttcc 113
             ||||||||||||||||||||
Sbjct: 14704 catctcctccacctttttcc 14685


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,407,928
Number of Sequences: 3902068
Number of extensions: 1407928
Number of successful extensions: 93070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92985
Number of HSP's gapped (non-prelim): 85
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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