ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467638.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
3dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 80 5e-12
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 5e-12
7ref|NM_188691.1| Oryza sativa (japonica cultivar-group), predic... 72 1e-09
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 1e-09
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
12gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
13dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
14dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
15dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
16dbj|AK108686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
17dbj|AK062747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
19dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
20ref|XM_483067.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
21ref|XM_469846.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.28
22gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 44 0.28
23gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.28
24dbj|AB099524.1| Oryza sativa (japonica cultivar-group) ORC5 mRNA... 44 0.28
25dbj|AK063449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
26gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, comp... 42 1.1
27ref|XM_323959.1| Neurospora crassa OR74A predicted protein (NCU0... 40 4.4
28ref|XM_953754.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.4
29gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete ... 40 4.4
30gb|AF508154.1| Pseudomonas aeruginosa UDP-GlcNAc C6 dehydratase ... 40 4.4
31emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.4
32emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 4.4
33emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment ... 40 4.4
34emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cos... 40 4.4
35emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 4.4
36gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 4.4
37gb|AF498417.1| Pseudomonas aeruginosa serotype 06 putative O-ant... 40 4.4
38gb|AF498416.1| Pseudomonas aeruginosa serotype 05 putative O-ant... 40 4.4
39gb|AF498415.1| Pseudomonas aeruginosa serotype 04 putative O-ant... 40 4.4
40gb|AF498414.1| Pseudomonas aeruginosa serotype 03 putative O-ant... 40 4.4
41gb|AF498413.1| Pseudomonas aeruginosa serotype 020 putative O-an... 40 4.4
42gb|AF498412.1| Pseudomonas aeruginosa serotype 02 putative O-ant... 40 4.4
43gb|AF498411.1| Pseudomonas aeruginosa serotype 019 putative O-an... 40 4.4
44gb|AF498408.1| Pseudomonas aeruginosa serotype 016 putative O-an... 40 4.4
45gb|AF498407.1| Pseudomonas aeruginosa serotype 015 putative O-an... 40 4.4
46gb|AF498405.1| Pseudomonas aeruginosa serotype 014 putative O-an... 40 4.4
47gb|AF498404.1| Pseudomonas aeruginosa serotype 013 putative O-an... 40 4.4
48gb|AF498403.1| Pseudomonas aeruginosa serotype 012 putative O-an... 40 4.4
49gb|AF498402.1| Pseudomonas aeruginosa serotype 011 putative O-an... 40 4.4
50gb|AF498401.1| Pseudomonas aeruginosa serotype 010 putative O-an... 40 4.4
51gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 4.4
52gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, comp... 40 4.4
53gb|AE004738.1| Pseudomonas aeruginosa PAO1, section 299 of 529 o... 40 4.4
54gb|AF540991.1| Pseudomonas aeruginosa isolate 2-164 O-antigen bi... 40 4.4
55gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 4.4
56gb|AF035937.1|AF035937 Pseudomonas aeruginosa strain IATS O6 Rps... 40 4.4
57emb|AJ328447.1|HSA328447 Homo sapiens genomic sequence surroundi... 40 4.4
58gb|U50396.1|PAU50396 Pseudomonas aeruginosa Wzz (Rol) (wzz (rol)... 40 4.4 
>ref|XM_467638.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1074

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                        
Query: 271  ggcggtcgtcatgccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggt 330
            |||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1005 ggcgctcggcatggcgtcccagaggaggtcggcgatgacccggttggcggcgtcggaggt 946

                
Query: 331  gtgg 334
            ||||
Sbjct: 945  gtgg 942
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 271      ggcggtcgtcatgccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggt 330
                |||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30573192 ggcgctcggcatggcgtcccagaggaggtcggcgatgacccggttggcggcgtcggaggt 30573251

                    
Query: 331      gtgg 334
                ||||
Sbjct: 30573252 gtgg 30573255
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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 271   ggcggtcgtcatgccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggt 330
             |||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 85200 ggcgctcggcatggcgtcccagaggaggtcggcgatgacccggttggcggcgtcggaggt 85259

                 
Query: 331   gtgg 334
             ||||
Sbjct: 85260 gtgg 85263
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                         
Query: 291   agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
             |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22926 agaggcggtcggcgatgacctggttggcggcgtcggaggtgtgg 22969
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                            
Query: 291      agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
                |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11236568 agaggcggtcggcgatgacctggttggcggcgtcggaggtgtgg 11236611
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                            
Query: 291      agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
                |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11315757 agaggcggtcggcgatgacctggttggcggcgtcggaggtgtgg 11315800
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>ref|NM_188691.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 717

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 291 agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
           |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 571 agaggcggtcggcgatgacctggttggtggcgtcggaggtgtgg 528
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                           
Query: 291     agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
               |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 3589577 agaggcggtcggcgatgacctggttggcggcgtcagaggtgtgg 3589620



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 239      gcgccggcgcgaggagccggag 260
                ||||||||||||||||||||||
Sbjct: 31107353 gcgccggcgcgaggagccggag 31107332
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                           
Query: 291     agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
               |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 8249178 agaggcggtcggcgatgacctggttggcagcgtcggaggtgtgg 8249135
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                           
Query: 291     agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
               |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 3589688 agaggcggtcggcgatgacctggttggcggcgtcagaggtgtgg 3589731



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 239      gcgccggcgcgaggagccggag 260
                ||||||||||||||||||||||
Sbjct: 31197876 gcgccggcgcgaggagccggag 31197855
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                           
Query: 291     agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
               |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 7660192 agaggcggtcggcgatgacctggttggtggcgtcggaggtgtgg 7660235
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>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19,
              complete sequence
          Length = 150620

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                          
Query: 291    agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
              |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 107230 agaggcggtcggcgatgacctggttggcggcgtcagaggtgtgg 107273
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>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0086P08
          Length = 145312

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                         
Query: 291   agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
             |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 70768 agaggcggtcggcgatgacctggttggtggcgtcggaggtgtgg 70811
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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0624H09
          Length = 158719

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                          
Query: 291    agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
              |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 141541 agaggcggtcggcgatgacctggttggcagcgtcggaggtgtgg 141498
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0603C10
          Length = 187620

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 291   agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
             |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 42683 agaggcggtcggcgatgacctggttggcagcgtcggaggtgtgg 42640
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>dbj|AK108686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C04, full
            insert sequence
          Length = 1426

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 291  agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
            |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1088 agaggcggtcggcgatgacctggttggcagcgtcggaggtgtgg 1045
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>dbj|AK062747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F10, full
           insert sequence
          Length = 647

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 291 agaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
           |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 381 agaggcggtcggcgatgacctggttggtggcgtcggaggtgtgg 424
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 283      gccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
                |||| |||||||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct: 24130892 gccgtcccagaggaggtcggtgatgacccgattggcggcgtcggagttgtgg 24130943



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 311      cggttggcggcgtcggaggtg 331
                |||||||||||||||||||||
Sbjct: 24130839 cggttggcggcgtcggaggtg 24130859
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 283   gccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggtgtgg 334
             |||| |||||||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct: 84378 gccgtcccagaggaggtcggtgatgacccgattggcggcgtcggagttgtgg 84429



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   cggttggcggcgtcggaggtg 331
             |||||||||||||||||||||
Sbjct: 84325 cggttggcggcgtcggaggtg 84345
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>ref|XM_483067.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1470

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 283 gccggcccagaggcggtcggcgatgacccggttggcggcgtcggaggtgtg 333
           |||| |||||||| |||||| ||||||||| ||||||||||||||| ||||
Sbjct: 907 gccgtcccagaggaggtcggtgatgacccgattggcggcgtcggagttgtg 957



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 311 cggttggcggcgtcggaggtg 331
           |||||||||||||||||||||
Sbjct: 854 cggttggcggcgtcggaggtg 874
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>ref|XM_469846.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 239 gcgccggcgcgaggagccggag 260
           ||||||||||||||||||||||
Sbjct: 31  gcgccggcgcgaggagccggag 10
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 239   gcgccggcgcgaggagccggag 260
             ||||||||||||||||||||||
Sbjct: 27994 gcgccggcgcgaggagccggag 27973
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 254     gccggagccggagagctggcgg 275
               ||||||||||||||||||||||
Sbjct: 3961554 gccggagccggagagctggcgg 3961533
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>dbj|AB099524.1| Oryza sativa (japonica cultivar-group) ORC5 mRNA for origin
           recognition complex 5, complete cds
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 239 gcgccggcgcgaggagccggag 260
           ||||||||||||||||||||||
Sbjct: 31  gcgccggcgcgaggagccggag 10
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>dbj|AK063449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F10, full
           insert sequence
          Length = 2080

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 239 gcgccggcgcgaggagccggag 260
           ||||||||||||||||||||||
Sbjct: 392 gcgccggcgcgaggagccggag 371
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>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence
          Length = 237814

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 9     tttcagtatttatagacaaatgtag 33
             |||||||||||||||||| ||||||
Sbjct: 99632 tttcagtatttatagacatatgtag 99608
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>ref|XM_323959.1| Neurospora crassa OR74A predicted protein (NCU04604.1) partial mRNA
          Length = 1647

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 gcgaggagccggagccggag 266
           ||||||||||||||||||||
Sbjct: 913 gcgaggagccggagccggag 932
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>ref|XM_953754.1| Neurospora crassa OR74A hypothetical protein (NCU04604.1) partial
           mRNA
          Length = 1647

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 gcgaggagccggagccggag 266
           ||||||||||||||||||||
Sbjct: 913 gcgaggagccggagccggag 932
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>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence
          Length = 132470

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     gtatttatagacaaatgtag 33
              ||||||||||||||||||||
Sbjct: 109562 gtatttatagacaaatgtag 109581
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>gb|AF508154.1| Pseudomonas aeruginosa UDP-GlcNAc C6 dehydratase (wbpM) gene,
           complete cds
          Length = 1998

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 cggcgatgacccggttggcg 319
           ||||||||||||||||||||
Sbjct: 613 cggcgatgacccggttggcg 594
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 225   cggctggccctggcgcgccggcgcgagg 252
             |||||||||| | |||||||||||||||
Sbjct: 95784 cggctggcccggccgcgccggcgcgagg 95757
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 225    cggctggccctggcgcgccggcgcgagg 252
              |||||||||| | |||||||||||||||
Sbjct: 168821 cggctggcccggccgcgccggcgcgagg 168794
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>emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment 7/24
          Length = 287650

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gccagatcgatcagcatcaa 177
              ||||||||||||||||||||
Sbjct: 174194 gccagatcgatcagcatcaa 174213
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>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10
          Length = 161126

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    gcgaggagccggagccggag 266
              ||||||||||||||||||||
Sbjct: 146513 gcgaggagccggagccggag 146494
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    cggcgatgacccggttggcg 319
              ||||||||||||||||||||
Sbjct: 219712 cggcgatgacccggttggcg 219693
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 16119 cggcgatgacccggttggcg 16100
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>gb|AF498417.1| Pseudomonas aeruginosa serotype 06 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 14734

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 14504 cggcgatgacccggttggcg 14485
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>gb|AF498416.1| Pseudomonas aeruginosa serotype 05 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 22381

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 22151 cggcgatgacccggttggcg 22132
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>gb|AF498415.1| Pseudomonas aeruginosa serotype 04 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 14364

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 14134 cggcgatgacccggttggcg 14115
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>gb|AF498414.1| Pseudomonas aeruginosa serotype 03 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 19295

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 19065 cggcgatgacccggttggcg 19046
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>gb|AF498413.1| Pseudomonas aeruginosa serotype 020 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 23952

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 23722 cggcgatgacccggttggcg 23703
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>gb|AF498412.1| Pseudomonas aeruginosa serotype 02 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 22388

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 22158 cggcgatgacccggttggcg 22139
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>gb|AF498411.1| Pseudomonas aeruginosa serotype 019 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 16720

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 16490 cggcgatgacccggttggcg 16471
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>gb|AF498408.1| Pseudomonas aeruginosa serotype 016 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 22368

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 22138 cggcgatgacccggttggcg 22119
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>gb|AF498407.1| Pseudomonas aeruginosa serotype 015 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 22913

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 22683 cggcgatgacccggttggcg 22664
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>gb|AF498405.1| Pseudomonas aeruginosa serotype 014 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 13413

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 13183 cggcgatgacccggttggcg 13164
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>gb|AF498404.1| Pseudomonas aeruginosa serotype 013 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 13401

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 13171 cggcgatgacccggttggcg 13152
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>gb|AF498403.1| Pseudomonas aeruginosa serotype 012 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 24949

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 24719 cggcgatgacccggttggcg 24700
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>gb|AF498402.1| Pseudomonas aeruginosa serotype 011 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 12953

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 12723 cggcgatgacccggttggcg 12704
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>gb|AF498401.1| Pseudomonas aeruginosa serotype 010 putative O-antigen biosynthesis
             gene cluster, partial sequence
          Length = 16720

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 16490 cggcgatgacccggttggcg 16471
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 17223 cggcgatgacccggttggcg 17204
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>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence
          Length = 118562

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   gaggagccggagccggagagctgg 272
             ||||||||| ||||||||||||||
Sbjct: 33416 gaggagccgcagccggagagctgg 33439
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>gb|AE004738.1| Pseudomonas aeruginosa PAO1, section 299 of 529 of the complete
            genome
          Length = 12555

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  cggcgatgacccggttggcg 319
            ||||||||||||||||||||
Sbjct: 3443 cggcgatgacccggttggcg 3462
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>gb|AF540991.1| Pseudomonas aeruginosa isolate 2-164 O-antigen biosynthetic locus,
             partial sequence
          Length = 14738

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 14505 cggcgatgacccggttggcg 14486
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 18871 cggcgatgacccggttggcg 18852
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>gb|AF035937.1|AF035937 Pseudomonas aeruginosa strain IATS O6 RpsA (rpsA) gene, partial cds;
             Ihf-Beta, Wzz (wzz), and Wzx (wzx) genes, complete cds;
             and wbp gene cluster for O-antigen biosynthesis, complete
             sequence
          Length = 16736

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 15204 cggcgatgacccggttggcg 15185
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>emb|AJ328447.1|HSA328447 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ4-AO12RS
          Length = 751

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 cggcgcgaggagccggagccggag 266
           |||||||||| |||||||||||||
Sbjct: 230 cggcgcgaggggccggagccggag 253
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>gb|U50396.1|PAU50396 Pseudomonas aeruginosa Wzz (Rol) (wzz (rol)) gene, partial cds, WbpA
             (wbpB), WbpB (wbpB), WbpC (wbpC), WbpD (wbpD), WbpE
             (wbpE), Wzy (Rfc) (wzy (rfc)), Wzx (wzx), HisH (hisH),
             HisF (hisF), WbpG (wbpG), WbpH (wbpH), WbpI (wbpI), WbpJ
             (wbpJ), WbpK (wbpK), WbpL (wbpL), WbpM (wbpM) and WbpN
             (wbpN) genes, complete cds, and UvrB (uvrB) gene, partial
             cds
          Length = 24418

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cggcgatgacccggttggcg 319
             ||||||||||||||||||||
Sbjct: 20291 cggcgatgacccggttggcg 20272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,856
Number of Sequences: 3902068
Number of extensions: 2279856
Number of successful extensions: 48386
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47888
Number of HSP's gapped (non-prelim): 498
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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