>RL5_ANOGA (O44248) 60S ribosomal protein L5|
          Length = 327

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 269 KAKAPRSERRWPRCGRRPLKASSREAPPRRRWMRWP 162
           + ++PRS  RWP C   P +  SR   P      WP
Sbjct: 258 RRRSPRSGGRWPSCRSPPARRRSRSTRP----TSWP 289

>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1143

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 245 RRWPRCGRRPLKASSREAPPRRRWMRWPTCGQEDDR---CPACMTRRRQTLLMRCLLQCE 75
           R+ P+CG+               W++   CG+  ++   CP+C  +   ++   C  +CE
Sbjct: 649 RKCPQCGKETF------------WLKCDVCGELTEQLYYCPSCRMKNTSSVCESCGRECE 696

>HMGX7_CHICK (P50223) Homeobox protein GHOX-7 (CHOX-7) (Hox-7)|
          Length = 288

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 215 LKASSREAPPRRRWMRWPTCGQEDDR---CPACMTRRRQT 105
           LKA S E P R  WM+ P       R    PAC  R+ +T
Sbjct: 121 LKAESPEKPERSPWMQSPRFSPPPPRRLSPPACTLRKHKT 160

>GATA2_XENLA (P23770) GATA-binding factor 2 (GATA-2) (Transcription factor|
           xGATA-2)
          Length = 452

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 29  HINNQNFTYLTN--HTTARIGGGNASARFAGA*SCMPDTCRPP 151
           H+++Q   Y  N  H  AR+    A AR  G+  C P     P
Sbjct: 51  HLDSQGNPYYANSAHARARVSYSQAHARLTGSQMCRPHLLHSP 93

>GATA2_CHICK (P23824) GATA-binding factor 2 (GATA-2) (Transcription factor|
           NF-E1B)
          Length = 466

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 29  HINNQNFTYLTN--HTTARIGGGNASARFAGA*SCMPDTCRPP 151
           H+++Q   Y  N  H  AR+    A AR  G+  C P     P
Sbjct: 51  HLDSQGNPYYANSAHARARVSYSQAHARLTGSQMCRPHLIHSP 93

>FLGF_BUCBP (Q89AH8) Flagellar basal-body rod protein flgF|
          Length = 248

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   NLEIQIKTYKQSEFYLFNKSYNRSHWRRQRISKV 108
           N +I   TYK +  YL NK+   +H   + +S +
Sbjct: 162 NFDINDLTYKTNGLYLLNKNNKLNHTNHKNVSNI 195

>TSSC1_GECJA (Q6DUZ9) Protein TSSC1|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 1   TNNLEIQIKTYKQSEFYLFNKSYNRSHWRRQRISKVCRRLVMHAGHLSSSCPHVGHLI 174
           T N+   +KT ++   +++N  YN SH +    +    R+++ +  +S S    GHL+
Sbjct: 258 TRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVIL-SNMVSISSEPFGHLV 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,281,099
Number of Sequences: 219361
Number of extensions: 557551
Number of successful extensions: 1887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)