ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 0.41
2ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC5... 40 1.6
3gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 1.6
4emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 40 1.6
5gb|AF371960.1| Infectious spleen and kidney necrosis virus, comp... 38 6.4
6gb|AY554395.1| Takifugu rubripes claudin 10c (cldn10c) gene, com... 38 6.4
7ref|XM_657148.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 6.4
8emb|AL627429.8| Human DNA sequence from clone RP11-361G9 on chro... 38 6.4
9gb|CP000316.1| Polaromonas sp. JS666, complete genome 38 6.4
10gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosom... 38 6.4
11gb|AC156838.3| Pan troglodytes BAC clone CH251-75L15 from chromo... 38 6.4
12gb|AC159107.2| Pan troglodytes BAC clone CH251-567D12 from chrom... 38 6.4
13dbj|BS000187.1| Pan troglodytes chromosome 22 clone:PTB-037I20, ... 38 6.4
14dbj|BS000186.1| Pan troglodytes chromosome 22 clone:RP43-074L01,... 38 6.4
15dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 6.4
16emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chr... 38 6.4
17dbj|AP000165.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 38 6.4
18dbj|AP000315.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 38 6.4 
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     gattaaccaaagtaattaaac 101
              |||||||||||||||||||||
Sbjct: 320411 gattaaccaaagtaattaaac 320391
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>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA
          Length = 1754

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  cagtacagggaacagattaa 86
           ||||||||||||||||||||
Sbjct: 533 cagtacagggaacagattaa 552
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gcgccggccggcggtacgta 136
              ||||||||||||||||||||
Sbjct: 472526 gcgccggccggcggtacgta 472507
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>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05
          Length = 1754

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  cagtacagggaacagattaa 86
           ||||||||||||||||||||
Sbjct: 533 cagtacagggaacagattaa 552
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>gb|AF371960.1| Infectious spleen and kidney necrosis virus, complete genome
          Length = 111362

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   gaccaaatcaaccaggcgc 120
             |||||||||||||||||||
Sbjct: 83001 gaccaaatcaaccaggcgc 83019
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>gb|AY554395.1| Takifugu rubripes claudin 10c (cldn10c) gene, complete cds
          Length = 5940

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 64   acacagtacagggaacaga 82
            |||||||||||||||||||
Sbjct: 2028 acacagtacagggaacaga 2010
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>ref|XM_657148.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4636.2), mRNA
          Length = 696

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 99  aacgaccaaatcaaccagg 117
           |||||||||||||||||||
Sbjct: 169 aacgaccaaatcaaccagg 187
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>emb|AL627429.8| Human DNA sequence from clone RP11-361G9 on chromosome 10 Contains
            part of the gene for a novel NHL repeat domain containing
            protein (FLJ33312, FLJ25621), complete sequence
          Length = 23418

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 66   acagtacagggaacagatt 84
            |||||||||||||||||||
Sbjct: 2762 acagtacagggaacagatt 2744
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 110     caaccaggcgccggccggc 128
               |||||||||||||||||||
Sbjct: 4476860 caaccaggcgccggccggc 4476878
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>gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosome 10, complete sequence
          Length = 196603

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     cagtacagggaacagatta 85
              |||||||||||||||||||
Sbjct: 148985 cagtacagggaacagatta 149003
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>gb|AC156838.3| Pan troglodytes BAC clone CH251-75L15 from chromosome unknown, complete
              sequence
          Length = 180639

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     gcatcacacacagtacagg 75
              |||||||||||||||||||
Sbjct: 170231 gcatcacacacagtacagg 170249
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>gb|AC159107.2| Pan troglodytes BAC clone CH251-567D12 from chromosome unknown,
             complete sequence
          Length = 198786

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    gcatcacacacagtacagg 75
             |||||||||||||||||||
Sbjct: 42652 gcatcacacacagtacagg 42634
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>dbj|BS000187.1| Pan troglodytes chromosome 22 clone:PTB-037I20, map 22, partial
           sequences, complete sequence
          Length = 45529

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  gcatcacacacagtacagg 75
           |||||||||||||||||||
Sbjct: 841 gcatcacacacagtacagg 859
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>dbj|BS000186.1| Pan troglodytes chromosome 22 clone:RP43-074L01, map 22, complete
              sequences
          Length = 176135

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     gcatcacacacagtacagg 75
              |||||||||||||||||||
Sbjct: 174970 gcatcacacacagtacagg 174988
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>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    gcatcacacacagtacagg 75
             |||||||||||||||||||
Sbjct: 96842 gcatcacacacagtacagg 96860
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>emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chromosome 4, complete
              sequence
          Length = 233077

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     acacagtacagggaacaga 82
              |||||||||||||||||||
Sbjct: 195028 acacagtacagggaacaga 195010
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>dbj|AP000165.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 1/9, complete sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    gcatcacacacagtacagg 75
             |||||||||||||||||||
Sbjct: 67601 gcatcacacacagtacagg 67619
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>dbj|AP000315.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B2344F14, complete sequence
          Length = 68109

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    gcatcacacacagtacagg 75
             |||||||||||||||||||
Sbjct: 67601 gcatcacacacagtacagg 67619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 843,483
Number of Sequences: 3902068
Number of extensions: 843483
Number of successful extensions: 60189
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60096
Number of HSP's gapped (non-prelim): 93
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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