ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor recep... 31 0.88
2WA_EMENI (Q03149) Conidial yellow pigment biosynthesis polyketid... 27 9.7

>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor|
           (G-CSF-R) (CD114 antigen)
          Length = 836

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 200 GQGNDSPVSFLVLRSDGS---VYCGRFGILMMHRCKCGVVW 87
           G  N + ++ + L  +GS   +  G FG+L++  C CG  W
Sbjct: 607 GATNSTVLTLMTLTPEGSELHIILGLFGLLLLLTCLCGTAW 647



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>WA_EMENI (Q03149) Conidial yellow pigment biosynthesis polyketide synthase (EC|
            2.3.1.-) (PKS)
          Length = 2157

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 167  VLRSDGSVY-CGRFGILMMHRCKCGVVWSRSDRMTLVEVEQL 45
            VL +  ++Y CGR   L+  RC+ G     + +  LVEV+QL
Sbjct: 1013 VLSTSDTIYACGRRAQLLTERCQPGTHAMLAIKAPLVEVKQL 1054


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,685,110
Number of Sequences: 219361
Number of extensions: 812100
Number of successful extensions: 2552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2552
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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