ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
2dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
3dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
4ref|XM_474130.1| Oryza sativa (japonica cultivar-group), predic... 60 5e-06
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
6dbj|AK061488.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
7emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 60 5e-06
8emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 60 5e-06
9gb|AY106505.1| Zea mays PCO072994 mRNA sequence 52 0.001
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.072
11dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.072
12dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.072
13gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
14ref|XM_879337.1| PREDICTED: Bos taurus similar to eukaryotic tra... 44 0.29
15ref|XM_879302.1| PREDICTED: Bos taurus similar to eukaryotic tra... 44 0.29
16ref|XM_879242.1| PREDICTED: Bos taurus similar to eukaryotic tra... 44 0.29
17ref|XM_583026.2| PREDICTED: Bos taurus similar to eukaryotic tra... 44 0.29
18emb|AL355272.3| Human DNA sequence from clone RP5-955L16 on chro... 44 0.29
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
20dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.29
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
22dbj|AB071804.1| Oryza sativa (japonica cultivar-group) mRNA for ... 44 0.29
23gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 42 1.1
24dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.1
25ref|XM_474813.1| Oryza sativa (japonica cultivar-group), predic... 40 4.5
26ref|XM_465575.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
27gb|AC140478.2| Mus musculus BAC clone RP24-149A3 from chromosome... 40 4.5
28gb|AC109992.6| Homo sapiens 3 BAC RP11-383G6 (Roswell Park Cance... 40 4.5
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.5
30emb|Z21681.1|NLLATGNA N.lactamdurans lysine 6-aminotransferase gene 40 4.5
31gb|CP000088.1| Thermobifida fusca YX, complete genome 40 4.5
32emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 4.5
33gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Canc... 40 4.5
34gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 4.5
35gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 4.5
36gb|AC079403.3| Homo sapiens BAC clone RP11-704A20 from 4, comple... 40 4.5
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.5
39emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80' pa... 40 4.5
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.5
41dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
42dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
43gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, c... 40 4.5
44gb|AC138293.11| Mus musculus chromosome 18, clone RP23-33P24, co... 40 4.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 4e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                           
Query: 234     ccgcagaaggcctcccggttggcggcggcgccgccgcgcaggatgtagtggccgagcgac 293
               ||||||||||| |||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 3188139 ccgcagaaggcgtcccggttggcggcggcgccgccgcggacgaggaagtggccgagcgac 3188198

                                            
Query: 294     ggcgtggtggtcccctccacgcggttctc 322
               ||||||| |||  ||||||||||||||||
Sbjct: 3188199 ggcgtggcggtggcctccacgcggttctc 3188227



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 280      agtggccgagcgacggcgtg 299
                ||||||||||||||||||||
Sbjct: 16079558 agtggccgagcgacggcgtg 16079577
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>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0419H03
          Length = 129020

 Score =  113 bits (57), Expect = 4e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                          
Query: 234    ccgcagaaggcctcccggttggcggcggcgccgccgcgcaggatgtagtggccgagcgac 293
              ||||||||||| |||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 116293 ccgcagaaggcgtcccggttggcggcggcgccgccgcggacgaggaagtggccgagcgac 116352

                                           
Query: 294    ggcgtggtggtcccctccacgcggttctc 322
              ||||||| |||  ||||||||||||||||
Sbjct: 116353 ggcgtggcggtggcctccacgcggttctc 116381
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>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1103G11
          Length = 182931

 Score =  113 bits (57), Expect = 4e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                         
Query: 234   ccgcagaaggcctcccggttggcggcggcgccgccgcgcaggatgtagtggccgagcgac 293
             ||||||||||| |||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 60326 ccgcagaaggcgtcccggttggcggcggcgccgccgcggacgaggaagtggccgagcgac 60385

                                          
Query: 294   ggcgtggtggtcccctccacgcggttctc 322
             ||||||| |||  ||||||||||||||||
Sbjct: 60386 ggcgtggcggtggcctccacgcggttctc 60414
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>ref|XM_474130.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 957

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 280 agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
           ||||||||||||||||||||  | | ||  | ||||||||||||||||||||||||||
Sbjct: 865 agtggccgagcgacggcgtgccgctgccggcgacgcggttctcgtcgcagaggaactc 808
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 280      agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
                ||||||||||||||||||||  | | ||  | ||||||||||||||||||||||||||
Sbjct: 33153316 agtggccgagcgacggcgtgccgctgccggcgacgcggttctcgtcgcagaggaactc 33153259
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>dbj|AK061488.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A09, full
            insert sequence
          Length = 1329

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 280  agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
            ||||||||||||||||||||  | | ||  | ||||||||||||||||||||||||||
Sbjct: 1051 agtggccgagcgacggcgtgccgctgccggcgacgcggttctcgtcgcagaggaactc 994
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>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 280   agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
             ||||||||||||||||||||  | | ||  | ||||||||||||||||||||||||||
Sbjct: 43740 agtggccgagcgacggcgtgccgctgccggcgacgcggttctcgtcgcagaggaactc 43683
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 280   agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
             ||||||||||||||||||||  | | ||  | ||||||||||||||||||||||||||
Sbjct: 35966 agtggccgagcgacggcgtgccgctgccggcgacgcggttctcgtcgcagaggaactc 35909
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>gb|AY106505.1| Zea mays PCO072994 mRNA sequence
          Length = 861

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 280 agtggccgagcgacggcgtggtggtcccctccacgcggttctcgtcgcagaggaactc 337
           |||||||||||||||| |||  | | ||| | ||||||||||||||||| ||||||||
Sbjct: 471 agtggccgagcgacggggtgccgcttcccgcgacgcggttctcgtcgcacaggaactc 414
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 307      cctccacgcggttctcgtcgcagaggaactc 337
                |||||||||| ||||| ||||||||||||||
Sbjct: 28296988 cctccacgcgattctcctcgcagaggaactc 28296958
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0661G04
          Length = 157292

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 307  cctccacgcggttctcgtcgcagaggaactc 337
            |||||||||| ||||| ||||||||||||||
Sbjct: 9566 cctccacgcgattctcctcgcagaggaactc 9536
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 307   cctccacgcggttctcgtcgcagaggaactc 337
             |||||||||| ||||| ||||||||||||||
Sbjct: 95017 cctccacgcgattctcctcgcagaggaactc 94987
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09
              map S1559, complete sequence
          Length = 190721

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 249    cggttggcggcggcgccgccgc 270
              ||||||||||||||||||||||
Sbjct: 107587 cggttggcggcggcgccgccgc 107608
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>ref|XM_879337.1| PREDICTED: Bos taurus similar to eukaryotic translation initiation
           factor 3, subunit 10 (theta), transcript variant 5
           (LOC506564), mRNA
          Length = 6666

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 254 ggcggcggcgccgccgcgcagg 275
           ||||||||||||||||||||||
Sbjct: 24  ggcggcggcgccgccgcgcagg 45
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>ref|XM_879302.1| PREDICTED: Bos taurus similar to eukaryotic translation initiation
           factor 3, subunit 10 (theta), transcript variant 4
           (LOC506564), mRNA
          Length = 6843

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 254 ggcggcggcgccgccgcgcagg 275
           ||||||||||||||||||||||
Sbjct: 24  ggcggcggcgccgccgcgcagg 45
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>ref|XM_879242.1| PREDICTED: Bos taurus similar to eukaryotic translation initiation
           factor 3, subunit 10 (theta), transcript variant 2
           (LOC506564), mRNA
          Length = 1677

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 254 ggcggcggcgccgccgcgcagg 275
           ||||||||||||||||||||||
Sbjct: 24  ggcggcggcgccgccgcgcagg 45
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>ref|XM_583026.2| PREDICTED: Bos taurus similar to eukaryotic translation initiation
           factor 3, subunit 10 (theta), transcript variant 1
           (LOC506564), mRNA
          Length = 6861

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 254 ggcggcggcgccgccgcgcagg 275
           ||||||||||||||||||||||
Sbjct: 24  ggcggcggcgccgccgcgcagg 45
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>emb|AL355272.3| Human DNA sequence from clone RP5-955L16 on chromosome 6 contains
           the gene for a novel RFX DNA binding domain containing
           protein and a CpG island, complete sequence
          Length = 105463

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 20  aaacagaacttaagaatcactt 41
           ||||||||||||||||||||||
Sbjct: 760 aaacagaacttaagaatcactt 781
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 249     cggttggcggcggcgccgccgc 270
               ||||||||||||||||||||||
Sbjct: 3739915 cggttggcggcggcgccgccgc 3739936
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 262     cgccgccgcgcaggatgtagtggccgagcg 291
               ||||||||| || |||||||||||||||||
Sbjct: 2529883 cgccgccgcccatgatgtagtggccgagcg 2529854
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 249     cggttggcggcggcgccgccgc 270
               ||||||||||||||||||||||
Sbjct: 3748609 cggttggcggcggcgccgccgc 3748630
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>dbj|AB071804.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
           factor PCF3, partial cds
          Length = 1649

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 249 cggttggcggcggcgccgccgc 270
           ||||||||||||||||||||||
Sbjct: 907 cggttggcggcggcgccgccgc 886
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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 382256 ggcggcggcgccgccgcgcag 382276



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 381182 ggcggcggcgccgccgcgcag 381202



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 380582 ggcggcggcgccgccgcgcag 380602



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 379982 ggcggcggcgccgccgcgcag 380002



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 378908 ggcggcggcgccgccgcgcag 378928



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 378308 ggcggcggcgccgccgcgcag 378328



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 377235 ggcggcggcgccgccgcgcag 377255



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 376635 ggcggcggcgccgccgcgcag 376655



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 376035 ggcggcggcgccgccgcgcag 376055



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 370518 ggcggcggcgccgccgcgcag 370498



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    ggcggcggcgccgccgcgcag 274
              |||||||||||||||||||||
Sbjct: 369919 ggcggcggcgccgccgcgcag 369899
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 239    gaaggcctcccggttggcggcggcg 263
              ||||||| |||||||||||||||||
Sbjct: 234818 gaaggccgcccggttggcggcggcg 234794
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>ref|XM_474813.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gcggcgccgccgcgcaggat 277
           ||||||||||||||||||||
Sbjct: 257 gcggcgccgccgcgcaggat 276
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>ref|XM_465575.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 564

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 agtggccgagcgacggcgtg 299
           ||||||||||||||||||||
Sbjct: 330 agtggccgagcgacggcgtg 311
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>gb|AC140478.2| Mus musculus BAC clone RP24-149A3 from chromosome 6, complete sequence
          Length = 162440

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     gaaacagaacttaagaatcacttt 42
              ||||||||||||||||| ||||||
Sbjct: 133907 gaaacagaacttaagaagcacttt 133930
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>gb|AC109992.6| Homo sapiens 3 BAC RP11-383G6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 112544

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agaacttaagaatcactttt 43
             ||||||||||||||||||||
Sbjct: 87870 agaacttaagaatcactttt 87851
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 260     ggcgccgccgcgcaggatgtagtggccg 287
               ||||| |||||||||||||| |||||||
Sbjct: 4336703 ggcgcggccgcgcaggatgtggtggccg 4336676
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>emb|Z21681.1|NLLATGNA N.lactamdurans lysine 6-aminotransferase gene
          Length = 1600

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 ttcttcgtggacggtggcgc 232
           ||||||||||||||||||||
Sbjct: 479 ttcttcgtggacggtggcgc 498
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     tgtagtggccgagcgacggc 296
               ||||||||||||||||||||
Sbjct: 2625081 tgtagtggccgagcgacggc 2625100
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    tggcggcggcgccgccgcgc 272
              ||||||||||||||||||||
Sbjct: 109603 tggcggcggcgccgccgcgc 109584
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>gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 243990

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     gaaacagaacttaagaatcacttt 42
              ||||||||||||||||| ||||||
Sbjct: 112857 gaaacagaacttaagaagcacttt 112880
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 254     ggcggcggcgccgccgcgcaggat 277
               ||||||||||||| ||||||||||
Sbjct: 3657637 ggcggcggcgccgtcgcgcaggat 3657614
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 256     cggcggcgccgccgcgcagg 275
               ||||||||||||||||||||
Sbjct: 2008395 cggcggcgccgccgcgcagg 2008414
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>gb|AC079403.3| Homo sapiens BAC clone RP11-704A20 from 4, complete sequence
          Length = 180699

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tcagttgttccacttccaca 63
             ||||||||||||||||||||
Sbjct: 80347 tcagttgttccacttccaca 80366
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 253      tggcggcggcgccgccgcgcagga 276
                ||||||||||||||||| ||||||
Sbjct: 14563758 tggcggcggcgccgccgtgcagga 14563781
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     cggcggcgccgccgcgcagg 275
               ||||||||||||||||||||
Sbjct: 3855559 cggcggcgccgccgcgcagg 3855540



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     cggcggcgccgccgcgcagg 275
               ||||||||||||||||||||
Sbjct: 1744051 cggcggcgccgccgcgcagg 1744032
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>emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80'  partial mRNA for mitochondrial
            targeted aldehyde-alcohol dehydrogenase (adhE gene)
          Length = 2714

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  cggttggcggcggcgccgcc 268
            ||||||||||||||||||||
Sbjct: 1745 cggttggcggcggcgccgcc 1764
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     cggcggcgccgccgcgcagg 275
               ||||||||||||||||||||
Sbjct: 7765001 cggcggcgccgccgcgcagg 7764982
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 253   tggcggcggcgccgccgcgcagga 276
             ||||||||||||||||| ||||||
Sbjct: 62047 tggcggcggcgccgccgtgcagga 62070
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>dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0403C01
          Length = 145635

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   agtggccgagcgacggcgtg 299
             ||||||||||||||||||||
Sbjct: 77792 agtggccgagcgacggcgtg 77811
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>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence
          Length = 148876

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cactttttcagttgttccac 56
              ||||||||||||||||||||
Sbjct: 140854 cactttttcagttgttccac 140873
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>gb|AC138293.11| Mus musculus chromosome 18, clone RP23-33P24, complete sequence
          Length = 235495

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cactttttcagttgttccac 56
             ||||||||||||||||||||
Sbjct: 52406 cactttttcagttgttccac 52425


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,548,909
Number of Sequences: 3902068
Number of extensions: 2548909
Number of successful extensions: 52667
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51191
Number of HSP's gapped (non-prelim): 1472
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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