ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENP1_BOVIN (O18956) Ectonucleoside triphosphate diphosphohydrola... 31 0.62
2T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspa... 28 5.3
3TLR12_MOUSE (Q6QNU9) Toll-like receptor 12 precursor 28 6.9
4PP4R3_ASHGO (Q75E32) Serine/threonine-protein phosphatase 4 regu... 28 6.9
5PCSK5_MOUSE (Q04592) Proprotein convertase subtilisin/kexin type... 27 9.0
6NPY4R_HUMAN (P50391) Neuropeptide Y receptor type 4 (NPY4-R) (Pa... 27 9.0

>ENP1_BOVIN (O18956) Ectonucleoside triphosphate diphosphohydrolase 1 (EC|
           3.6.1.5) (NTPDase1) (Ecto-ATP diphosphohydrolase)
           (ATPDase) (Lymphoid cell activation antigen) (CD39
           antigen) (Ecto-apyrase)
          Length = 513

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 4/27 (14%)
 Frame = +1

Query: 142 KCKQALV----SSFCTYTSCTINGTFL 210
           +C+Q+++    +S+C Y+SC+ NG FL
Sbjct: 326 RCRQSIIQLFNTSYCPYSSCSFNGVFL 352



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>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan|
           transmembrane protein L6H)
          Length = 197

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 204 CAIDCATCIGAEATD*CLLAFVQSYVVLVLNMEVS 100
           C   CA C+G      CL+  V + ++LV N E S
Sbjct: 2   CTGKCARCVGLSLITLCLVCIVANALLLVPNGETS 36



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>TLR12_MOUSE (Q6QNU9) Toll-like receptor 12 precursor|
          Length = 906

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 291 LAYLEVRFRLWMDSGLCRGDLGDRVVFEKCAIDC 190
           + YL+  FR+W+     +GD G R +F+     C
Sbjct: 735 IPYLQALFRVWLQGLRGKGDKGKRFLFDVFVSHC 768



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>PP4R3_ASHGO (Q75E32) Serine/threonine-protein phosphatase 4 regulatory subunit|
           3 (PP4R3)
          Length = 687

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 174 HLYKLHNQWHISRKPLCHQDLLYKVHYPSTI 266
           +L+ L N +HI+ + L H+DLL   H   T+
Sbjct: 184 YLHTLINHFHIAEEKLLHKDLLLLSHIIKTL 214



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>PCSK5_MOUSE (Q04592) Proprotein convertase subtilisin/kexin type 5 precursor (EC|
            3.4.21.-) (Proprotein convertase PC5)
            (Subtilisin/kexin-like protease PC5) (PC6)
            (Subtilisin-like proprotein convertase 6) (SPC6)
          Length = 1877

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 210  EKCAIDCATCIGAEATD*CL 151
            EKC+ DC +C GA+    CL
Sbjct: 1256 EKCSEDCVSCSGADLCQQCL 1275



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>NPY4R_HUMAN (P50391) Neuropeptide Y receptor type 4 (NPY4-R) (Pancreatic|
           polypeptide receptor 1) (PP1)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 LHLYKLHNQWHISRKPLCHQDLLYKV 248
           LH++     WH    P+CH +L++ V
Sbjct: 281 LHVFNSLEDWHHEAIPICHGNLIFLV 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,822,678
Number of Sequences: 219361
Number of extensions: 983285
Number of successful extensions: 1804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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