ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart50g01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469025.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1508 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 1195 cctgctgactcatgagaatctcaatagcaacatttggatctcc 1153
>ref|XM_469026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3574 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 3261 cctgctgactcatgagaatctcaatagcaacatttggatctcc 3219
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 109896 cctgctgactcatgagaatctcaatagcaacatttggatctcc 109938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 24993451 cctgctgactcatgagaatctcaatagcaacatttggatctcc 24993493 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtactt 39 ||||||||| ||||||||||||||||| Sbjct: 22486481 cttatattttgaaatggaaggagtactt 22486508
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 25258 cctgctgactcatgagaatctcaatagcaacatttggatctcc 25300
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 25084768 cctgctgactcatgagaatctcaatagcaacatttggatctcc 25084810 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtactt 39 ||||||||| ||||||||||||||||| Sbjct: 22479510 cttatattttgaaatggaaggagtactt 22479537
>dbj|AK100923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P16, full insert sequence Length = 3574 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatctcc 392 ||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 3261 cctgctgactcatgagaatctcaatagcaacatttggatctcc 3219
>gb|AY106578.1| Zea mays PCO089119 mRNA sequence Length = 777 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 350 cctgctggctcatgagaatctcaatggcaacattgggatc 389 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 387 cctgctgactcatcagaatctcaatggcaacatttggatc 348
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 |||||||||| |||||||||||||||||| Sbjct: 3404 gcttatatttcaaaatggaaggagtactt 3432
>gb|AC141114.14| Medicago truncatula clone mth2-8g20, complete sequence Length = 120527 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 ||||||||||||||||||| ||||||||| Sbjct: 42254 gcttatatttaaaaatggagggagtactt 42282
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence Length = 107448 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 ||||||||||||||||||||||||| Sbjct: 33809 cttatatttaaaaatggaaggagta 33785
>gb|AC146588.14| Medicago truncatula clone mth2-145c3, complete sequence Length = 116965 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 ||||||||||||||||||||||||| Sbjct: 33047 cttatatttaaaaatggaaggagta 33023
>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence Length = 122819 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 ||||||||||||||||||||||||| Sbjct: 5342 cttatatttaaaaatggaaggagta 5318
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 |||||||||| |||||||||||||||||| Sbjct: 2244 gcttatatttcaaaatggaaggagtactt 2272
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence Length = 99712 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 ||||||||||||||||||||||||| Sbjct: 23326 cttatatttaaaaatggaaggagta 23302
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence Length = 151594 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 ||||||||||||||||||||||||| Sbjct: 146252 cttatatttaaaaatggaaggagta 146276
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 |||||||||| |||||||||||||||||| Sbjct: 5316730 gcttatatttcaaaatggaaggagtactt 5316758
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtacttt 40 ||||||||||| ||||||||||||||||| Sbjct: 29946944 cttatatttaagaatggaaggagtacttt 29946972 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 atatttaaaaatggaaggagta 36 |||||||||||||||||||||| Sbjct: 9514793 atatttaaaaatggaaggagta 9514814 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagtac 37 |||||||| |||||||||||||||| Sbjct: 28412697 ttatattttaaaatggaaggagtac 28412721 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagta 36 |||||||| ||||||||||||||| Sbjct: 4230058 ttatattttaaaatggaaggagta 4230081
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtacttt 40 ||||||||||| ||||||||||||||||| Sbjct: 91502 cttatatttaagaatggaaggagtacttt 91530
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 4 taaaaaggcttatatttaaaaatggaaggagta 36 ||||||| ||||||||||||||| ||||||||| Sbjct: 18780 taaaaagacttatatttaaaaatagaaggagta 18812
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 |||||||||| |||||||||||||||||| Sbjct: 53431 gcttatatttcaaaatggaaggagtactt 53459
>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE Length = 96647 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagtac 37 ||||||||||||||| ||||||||||| Sbjct: 64299 gcttatatttaaaaacggaaggagtac 64273
>emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i23, COMPLETE SEQUENCE Length = 122746 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtac 37 ||||||||||||||||||| ||||||| Sbjct: 48920 gcttatatttaaaaatggagggagtac 48946 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtactttcaa 43 |||||||||||||||| | ||||||| ||||| Sbjct: 39555 cttatatttaaaaatgaagggagtaccttcaa 39586
>gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete sequence Length = 128535 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagta 36 ||||||||||||||||||| |||||| Sbjct: 8456 gcttatatttaaaaatggagggagta 8481
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence Length = 140874 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagta 36 ||||||||||||||||||| |||||| Sbjct: 42826 gcttatatttaaaaatggagggagta 42801
>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE Length = 149149 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagta 36 ||||||||||||||| |||||||||| Sbjct: 56016 gcttatatttaaaaacggaaggagta 56041
>gb|AC147482.2| Medicago truncatula chromosome 7 BAC clone mth2-93e11, complete sequence Length = 119127 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagta 36 ||||||||||||||||||| |||||| Sbjct: 28560 gcttatatttaaaaatggagggagta 28585
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 atatttaaaaatggaaggagta 36 |||||||||||||||||||||| Sbjct: 48222 atatttaaaaatggaaggagta 48243
>gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete sequence Length = 113744 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||| |||||||||| Sbjct: 104058 cttatatttaaaaacggaaggagta 104034
>gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete sequence Length = 130178 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagtactt 39 ||||||||||||||| ||| ||||||||| Sbjct: 115976 gcttatatttaaaaacggagggagtactt 115948
>gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete sequence Length = 139116 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||||| |||||| Sbjct: 104313 cttatatttaaaaatggagggagta 104337
>emb|CR932962.2| Medicago truncatula chromosome 5 clone mte1-70c24, COMPLETE SEQUENCE Length = 128704 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||| |||||||||| Sbjct: 115493 cttatatttaaaaacggaaggagta 115469
>emb|CR931740.2| Medicago truncatula chromosome 5 clone mth2-67g10, COMPLETE SEQUENCE Length = 153273 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtactt 39 ||||||||||||||| ||| ||||||||| Sbjct: 100112 gcttatatttaaaaacggagggagtactt 100140
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atctaaaaaggcttatatttaaaaa 25 ||||||||| ||||||||||||||| Sbjct: 860326 atctaaaaatgcttatatttaaaaa 860302 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ccatgttcagtactagtact 127 |||||||||||||||||||| Sbjct: 2292114 ccatgttcagtactagtact 2292133
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||||| |||||| Sbjct: 21357179 cttatatttaaaaatggagggagta 21357203 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ctaaaaaggcttatatttaaaaat 26 ||||||| |||||||||||||||| Sbjct: 18901310 ctaaaaatgcttatatttaaaaat 18901287 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cagtactagtactacataag 134 |||||||||||||||||||| Sbjct: 12870128 cagtactagtactacataag 12870147
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 tatatttaaaaatggaaggagtact 38 |||||||||||||||||| |||||| Sbjct: 29515925 tatatttaaaaatggaagaagtact 29515949
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||| |||||||| Sbjct: 6549775 cttatatttaaaaatgaaaggagta 6549799
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagtac 37 |||||||| |||||||||||||||| Sbjct: 127797 ttatattttaaaatggaaggagtac 127821
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 tatatttaaaaatggaaggagtact 38 |||||||||||||||||| |||||| Sbjct: 80431 tatatttaaaaatggaagaagtact 80455
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atctaaaaaggcttatatttaaaaa 25 ||||||||| ||||||||||||||| Sbjct: 23064 atctaaaaatgcttatatttaaaaa 23040
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||||| |||||| Sbjct: 1235 cttatatttaaaaatggagggagta 1259
>dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1008_E09 Length = 101964 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||||| |||||| Sbjct: 77347 cttatatttaaaaatggagggagta 77371
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagta 36 |||||||||||||||| |||||||| Sbjct: 110388 cttatatttaaaaatgaaaggagta 110412
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 atctaaaaaggcttatatttaaaaa 25 ||||||||| ||||||||||||||| Sbjct: 159546 atctaaaaatgcttatatttaaaaa 159522
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 attggacaaatgcaagcaggcact 158 ||||||||||| |||||||||||| Sbjct: 809040 attggacaaattcaagcaggcact 809063
>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018N12, complete sequence Length = 137127 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||||||| |||||| Sbjct: 112016 ttatatttaaaaatggagggagta 112039
>gb|AC163676.4| Mus musculus BAC clone RP24-81A22 from chromosome 3, complete sequence Length = 223760 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaggcttatatttaaaaat 26 |||||||||||||||||||| Sbjct: 137936 aaaggcttatatttaaaaat 137917
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 cttatatttaaaaatggaaggagtactt 39 ||||||||| ||||||||||||||||| Sbjct: 81728 cttatattttgaaatggaaggagtactt 81755
>gb|AC131593.16| Mus musculus chromosome 3, clone RP24-566M9, complete sequence Length = 143352 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaggcttatatttaaaaat 26 |||||||||||||||||||| Sbjct: 32578 aaaggcttatatttaaaaat 32559
>gb|AC118639.12| Mus musculus chromosome 15, clone RP24-112I4, complete sequence Length = 166053 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ctgatgcatggaactggagc 96 |||||||||||||||||||| Sbjct: 41700 ctgatgcatggaactggagc 41719
>gb|AC138548.8| Mus musculus chromosome 3, clone RP24-210N9, complete sequence Length = 155964 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaggcttatatttaaaaat 26 |||||||||||||||||||| Sbjct: 46586 aaaggcttatatttaaaaat 46605
>emb|AJ310833.1|MTR310833 Medicago truncatula genomic DNA, Sy13 locus Length = 2088 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||||||| ||| |||||||| Sbjct: 452 gcttatatttaaaaacggagggagtact 425
>gb|AC133572.35| Medicago truncatula clone mth2-10o11, complete sequence Length = 108164 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggag 34 ||||||||||||||||||| |||| Sbjct: 35419 gcttatatttaaaaatggagggag 35442
>gb|AC123571.8| Medicago truncatula clone mth1-14n3, complete sequence Length = 84556 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||||||| |||||| Sbjct: 37061 ttatatttaaaaatggagggagta 37038
>gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete sequence Length = 119096 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||| ||| |||||||||||| Sbjct: 87923 gcttatatttagaaacggaaggagtact 87950
>gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete sequence Length = 117577 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 cttatatttaaaaatggaaggagt 35 |||||||||||||||||| ||||| Sbjct: 115190 cttatatttaaaaatggagggagt 115167
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence Length = 83007 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||| ||||||| |||||||| Sbjct: 34539 gcttatatttagaaatggatggagtact 34512
>gb|AC130798.15| Medicago truncatula clone mth2-27f17, complete sequence Length = 92189 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||| ||| |||||||||||| Sbjct: 26647 gcttatatttagaaacggaaggagtact 26674
>gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete sequence Length = 104281 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||||||| ||| |||||||| Sbjct: 25588 gcttatatttaaaaacggagggagtact 25615
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence Length = 134901 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 11 gcttatatttaaaaatggaaggagtact 38 ||||||||||||||| ||| |||||||| Sbjct: 25349 gcttatatttaaaaacggagggagtact 25322
>emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chromosome 6q15-16.2 Contains the SPACA1 gene for sperm acrosome associated 1, part of the CNR1 gene for cannabinoid receptor 1 (brain) and a CpG island, complete sequence Length = 112212 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaaaaggcttatatttaaaa 24 |||||||||||||||||||| Sbjct: 7734 aaaaaggcttatatttaaaa 7753
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||| |||||||||||||| Sbjct: 78266 ttatatttagaaatggaaggagta 78243
>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence Length = 123526 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||| |||||||||||||| Sbjct: 36115 ttatatttagaaatggaaggagta 36092
>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence Length = 136675 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||| |||||||||| Sbjct: 74934 ttatatttaaaaacggaaggagta 74911
>gb|AC146333.35| Medicago truncatula clone mth2-8d3, complete sequence Length = 122694 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||||||| |||||| Sbjct: 41466 ttatatttaaaaatggagggagta 41489
>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17, complete sequence Length = 170138 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 atctaaaaaggcttatatttaaaa 24 |||||||||||| ||||||||||| Sbjct: 77602 atctaaaaaggcatatatttaaaa 77579
>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold Length = 360990 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 ctcctctacaaagtccactatcca 257 ||||||| |||||||||||||||| Sbjct: 225089 ctcctcttcaaagtccactatcca 225112
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||||||| |||||| Sbjct: 5045697 ttatatttaaaaatggagggagta 5045674
>gb|AC078806.18| Homo sapiens 3 BAC RP11-59B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141059 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tcaccaagatctcctctaca 243 |||||||||||||||||||| Sbjct: 71548 tcaccaagatctcctctaca 71529
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gataagcaagagatatgctg 301 |||||||||||||||||||| Sbjct: 4367225 gataagcaagagatatgctg 4367244
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagta 36 |||||||| ||||||||||||||| Sbjct: 68025 ttatattttaaaatggaaggagta 68048
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagta 36 |||||||| ||||||||||||||| Sbjct: 9828 ttatattttaaaatggaaggagta 9851
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0710F09 Length = 198867 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cagtactagtactacataag 134 |||||||||||||||||||| Sbjct: 128252 cagtactagtactacataag 128271
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ctaaaaaggcttatatttaaaaat 26 ||||||| |||||||||||||||| Sbjct: 3295 ctaaaaatgcttatatttaaaaat 3272
>gb|AF043346.1|AF043346 Zea mays cell wall invertase (incw3) gene, complete cds Length = 6997 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 ttatatttaaaaatggaaggagtacttt 40 |||||||| | ||||||||||||||||| Sbjct: 1830 ttatattttagaatggaaggagtacttt 1857
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ccatgttcagtactagtact 127 |||||||||||||||||||| Sbjct: 39613 ccatgttcagtactagtact 39632
>dbj|AP003911.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1368_G08 Length = 107074 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ccatgttcagtactagtact 127 |||||||||||||||||||| Sbjct: 90241 ccatgttcagtactagtact 90260
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ctaaaaaggcttatatttaaaaat 26 ||||||| |||||||||||||||| Sbjct: 101496 ctaaaaatgcttatatttaaaaat 101473
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ttatatttaaaaatggaaggagta 36 ||||||||||||||||| |||||| Sbjct: 5112174 ttatatttaaaaatggagggagta 5112151
>gb|AC132374.4| Mus musculus BAC clone RP24-69E21 from 10, complete sequence Length = 188514 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cacttccatgttcagtacta 122 |||||||||||||||||||| Sbjct: 10483 cacttccatgttcagtacta 10464
>gb|AC120163.10| Mus musculus chromosome 15, clone RP24-466O11, complete sequence Length = 129237 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ctgatgcatggaactggagc 96 |||||||||||||||||||| Sbjct: 3394 ctgatgcatggaactggagc 3375
>gb|AC133516.3| Mus musculus BAC clone RP23-260G15 from chromosome 10, complete sequence Length = 203750 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 cacttccatgttcagtacta 122 |||||||||||||||||||| Sbjct: 23593 cacttccatgttcagtacta 23612 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,864,299 Number of Sequences: 3902068 Number of extensions: 3864299 Number of successful extensions: 70160 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69528 Number of HSP's gapped (non-prelim): 632 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
