ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart50f06 |
|---|---|
| Clone Library Name | barley_pub |
>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)| Length = 877 Score = 35.4 bits (80), Expect = 0.036 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Frame = +1 Query: 22 IESHKETQLKNSQTPTTSQH-HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSR----- 183 +ES +T N + P + Q+ + L +++SK N ++SEPN TSS Sbjct: 583 VESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALR 642 Query: 184 --HSDHHARTFLCCRRHHGNQTPNDPSH 261 HHA T +GNQ + +H Sbjct: 643 KVRFQHHANTNTNSSATNGNQDTSQTTH 670
>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein| 2.2) (OsTIP2.2) Length = 248 Score = 34.7 bits (78), Expect = 0.061 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = -2 Query: 328 VYRYLYMCDNHTPVASNDY 272 VYRY+YMC +H PVAS+++ Sbjct: 230 VYRYVYMCGDHAPVASSEF 248
>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in| FKH1-STH1 intergenic region Length = 964 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 43 QLKNSQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRHS 189 QLK+S + ++++ QI + +SK T L S P+N + F + +S Sbjct: 640 QLKDSSMAASRTYNLLNQIFEKLNSKTIQLTALHSSPSNESAFLVTNNS 688
>ISPD_BACHK (Q6HPT2) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase| (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) Length = 226 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 4 LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126 + GV++E+ + +QLK QTP ++L+ + A C+ Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180
>ISPD_BACC1 (Q73FC1) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase| (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) Length = 226 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 4 LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126 + GV++E+ + +QLK QTP ++L+ + A C+ Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180
>ISPD_BACAN (Q81VV5) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase| (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) Length = 226 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 4 LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126 + GV++E+ + +QLK QTP ++L+ + A C+ Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180
>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)| (MALA-2) Length = 537 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +1 Query: 55 SQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNN-MTFFTSSRHSDHHARTFLC 216 SQ + + ++ E H+ SK +G+ P FT + S+ H R+F C Sbjct: 320 SQLEVSEGSQVTVKCEAHSGSKVVLLSGVEPRPPTPQVQFTLNASSEDHKRSFFC 374
>YP66_CAEEL (Q09215) Hypothetical protein B0495.6| Length = 87 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = +1 Query: 82 HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRH------SDHHARTFLCC--RRHHGN 237 H++ Q+E H SK Y T +R EP+ M ++ RH S + + C R N Sbjct: 9 HVLAQLE-HLQSK-YTGTAMRHEPSRMDCESAPRHSRLSNVSSRNEHVYCRCGEREPSSN 66 Query: 238 QTPNDPSH 261 +D SH Sbjct: 67 PLQSDKSH 74
>ZNF80_MACMU (P51505) Zinc finger protein 80| Length = 293 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 246 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 293
>ZNF80_PONPY (P51507) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273
>ZNF80_PANTR (P51506) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273
>ZNF80_GORGO (P51503) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273
>AZUR_PSEFC (P00285) Azurin| Length = 128 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +1 Query: 154 NNMTFFTSSRHSDHHARTFLCCRRHHGNQTPNDPSHGWL 270 + M+F T + D +TF +H GN N H W+ Sbjct: 11 DQMSFDTKAIEIDKSCKTFTVDLKHSGNLPKNVMGHNWV 49
>ISPD_BACCR (Q81J63) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase| (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) Length = 226 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +1 Query: 4 LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126 + GV++E+ + +QL QTP ++L+ + A C+ Sbjct: 140 VEQGVVVETVERSQLNAVQTPQGFSVSLLLEAHRSAKQSCF 180
>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating| surface antigen) Length = 612 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 37 ETQLKNSQTPTTSQ----HHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSS 180 +TQ +S + TT+ HH Q + + + ++ +PNNM FF ++ Sbjct: 95 QTQQPSSSSATTNNVVPPHHYNQQQSQQQQQQQQQYQQMQPQPNNMQFFDNT 146
>GNT1A_KLULA (Q9Y761) Glucose N-acetyltransferase 1-A (EC 2.4.1.-)| (N-acetylglucosaminyltransferase A) Length = 460 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 19 LIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCYNF 132 LIE +K+ L N+QT ++ ILQ + S YNF Sbjct: 235 LIEDNKQIALANNQTAELTEIEDILQQKIDDSEDIYNF 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.126 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,163,432 Number of Sequences: 219361 Number of extensions: 823467 Number of successful extensions: 1863 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1863 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
