ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 589 e-165
2gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 248 9e-63
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 186 3e-44
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 178 7e-42
5gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 176 3e-41
6gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 170 2e-39
7emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 155 1e-34
8gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, com... 119 6e-24
9emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.017
10gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 1.0
11emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 42 1.0
12emb|AL832661.1|HSM803971 Homo sapiens genomic DNA; cDNA DKFZp313... 42 1.0
13dbj|AK001423.1| Homo sapiens cDNA FLJ10561 fis, clone NT2RP2002672 42 1.0
14gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, comp... 42 1.0
15gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, com... 42 1.0
16emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 42 1.0
17emb|BX648964.1|HSM809115 Homo sapiens mRNA; cDNA DKFZp686J0156 (... 42 1.0
18gb|AC005384.2|AC005384 b326h7, complete sequence 42 1.0
19gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 4.1
20ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 4.1
21gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 4.1
22emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 4.1
23emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 4.1
24emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chr... 40 4.1
25emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 4.1
26ref|NG_004451.1| Rattus norvegicus RT1 class 1, M1, pseudogene 1... 40 4.1
27gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 40 4.1
28dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 4.1
29dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 4.1
30gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 4.1
31dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.1
32dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 4.1 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  589 bits (297), Expect = e-165
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                        
Query: 2    ggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgccc 61
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 62   gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                        
Query: 122  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 181
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975

                                                                        
Query: 182  tcaaagacgatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacaca 241
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 974  tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915

                                                                        
Query: 242  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 855

                         
Query: 302  gggcttgtgctcg 314
            |||||||||||||
Sbjct: 854  gggcttgtgctcg 842
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>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score =  248 bits (125), Expect = 9e-63
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                        
Query: 190  gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187

                                                                        
Query: 250  atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127

                 
Query: 310  gctcg 314
            |||||
Sbjct: 2126 gctcg 2122
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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  186 bits (94), Expect = 3e-44
 Identities = 167/186 (89%), Gaps = 4/186 (2%)
 Strand = Plus / Minus

                                                                        
Query: 131  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 189
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978

                                                                        
Query: 190  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 248
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 977  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 249  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 308
            |||| ||| |||||||||| | ||||||| |||||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgagtctc-gggcacggcggcgatcaagcgctgggcttg 860

                  
Query: 309  tgctcg 314
            ||||||
Sbjct: 859  tgctcg 854



 Score =  115 bits (58), Expect = 9e-23
 Identities = 104/116 (89%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgta 64
            |||||||||||||||||||| ||||||||||||||  ||||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 65   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 120
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028
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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  178 bits (90), Expect = 7e-42
 Identities = 165/186 (88%), Gaps = 3/186 (1%)
 Strand = Plus / Minus

                                                                        
Query: 131  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 189
            |||||||||| || ||||| |||||||  |||||||||||| ||||||||||||||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979

                                                                        
Query: 190  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 248
            |||||| |||| ||| ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 978  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 249  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 308
            |||| ||| |||||||||| | | ||||| |||||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttg 860

                  
Query: 309  tgctcg 314
            ||||||
Sbjct: 859  tgctcg 854



 Score =  113 bits (57), Expect = 3e-22
 Identities = 103/116 (88%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgta 64
            |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 65   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 120
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029
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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  176 bits (89), Expect = 3e-41
 Identities = 157/177 (88%), Gaps = 2/177 (1%)
 Strand = Plus / Minus

                                                                        
Query: 139  aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 198
            |||| ||||| |||||||  |||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979

                                                                        
Query: 199  ct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 257
            || ||| ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| 
Sbjct: 978  ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919

                                                                     
Query: 258  gaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 314
            |||||||||| | | ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 918  gaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttgtgctcg 863



 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                  
Query: 1    gggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaa 54
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1142 gggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089
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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  170 bits (86), Expect = 2e-39
 Identities = 165/186 (88%), Gaps = 4/186 (2%)
 Strand = Plus / Minus

                                                                        
Query: 131  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 189
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951

                                                                        
Query: 190  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 248
            |||||| |||||| | ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 950  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891

                                                                        
Query: 249  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 308
            |||| ||| ||| |||||| | ||||||| ||||||||||||||| |||| |||||||||
Sbjct: 890  aattcaatcgagctccggtcacgagtctc-gggcacggcggcgattaagcgctgggcttg 832

                  
Query: 309  tgctcg 314
            ||||||
Sbjct: 831  tgctcg 826



 Score =  129 bits (65), Expect = 6e-27
 Identities = 108/120 (90%), Gaps = 8/120 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    gggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgcc 60
            |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1111 gggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgcc 1053

                                                                        
Query: 61   cgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 120
            |      ||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1052 c------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1000
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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score =  155 bits (78), Expect = 1e-34
 Identities = 163/186 (87%), Gaps = 4/186 (2%)
 Strand = Plus / Minus

                                                                        
Query: 131  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 189
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976

                                                                        
Query: 190  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 248
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 975  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917

                                                                        
Query: 249  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 308
            |||| ||| | |||||||| | ||||||| ||||||||||||| ||||||  |||| |||
Sbjct: 916  aattcaatcggggtccggtcacgagtctc-gggcacggcggcgttcaagcgttgggattg 858

                  
Query: 309  tgctcg 314
            ||||||
Sbjct: 857  tgctcg 852



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 95/107 (88%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 14   taatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgtaataataagc 73
            ||||||||||| ||||||||||||||  ||||||||||||| | ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagt 1072

                                                           
Query: 74   aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 120
            ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026
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>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds
          Length = 808

 Score =  119 bits (60), Expect = 6e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                       
Query: 255 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 749
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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 100    ctgactctggaccaaactgaagcc 123
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
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>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    acccaaactgaacacaagcat 149
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     caataaaccaatacacaaagt 57
              |||||||||||||||||||||
Sbjct: 156591 caataaaccaatacacaaagt 156571
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>emb|AL832661.1|HSM803971 Homo sapiens genomic DNA; cDNA DKFZp313E1012 (from clone
            DKFZp313E1012)
          Length = 3233

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   tttaatatcaagggataatgc 32
            |||||||||||||||||||||
Sbjct: 2536 tttaatatcaagggataatgc 2516
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>dbj|AK001423.1| Homo sapiens cDNA FLJ10561 fis, clone NT2RP2002672
          Length = 1665

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   tttaatatcaagggataatgc 32
            |||||||||||||||||||||
Sbjct: 1016 tttaatatcaagggataatgc 996
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>gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, complete sequence
          Length = 166120

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    tttaatatcaagggataatgc 32
             |||||||||||||||||||||
Sbjct: 10219 tttaatatcaagggataatgc 10239
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>gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, complete sequence
          Length = 185857

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     tttaatatcaagggataatgc 32
              |||||||||||||||||||||
Sbjct: 182517 tttaatatcaagggataatgc 182537
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    caataaaccaatacacaaagt 57
             |||||||||||||||||||||
Sbjct: 34762 caataaaccaatacacaaagt 34782
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>emb|BX648964.1|HSM809115 Homo sapiens mRNA; cDNA DKFZp686J0156 (from clone DKFZp686J0156)
          Length = 4471

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   tttaatatcaagggataatgc 32
            |||||||||||||||||||||
Sbjct: 3803 tttaatatcaagggataatgc 3783
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>gb|AC005384.2|AC005384 b326h7, complete sequence
          Length = 178292

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    tttaatatcaagggataatgc 32
             |||||||||||||||||||||
Sbjct: 66266 tttaatatcaagggataatgc 66246
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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     aataagcaaataaacttaaa 86
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaataaacttaaacaacatc 93
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 62     gtaataataagcaaataaacttaaacaa 89
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    tcaagggataatgcccagcaataa 42
             ||||||||||| ||||||||||||
Sbjct: 10316 tcaagggataaagcccagcaataa 10293
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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    taataataagcaaataaacttaaa 86
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623
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>emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chromosome 11 Contains
            the 3' end of the Galnt9 gene for
            UDP-N-acetyl-alpha-D-galactosamine: polypeptide
            N-acetylgalactosaminyltransferase 9, a novel gene, a
            novel gene (2310079P12Rik), the  Hand1 gene for heart and
            neural crest derivatives expressed transcript 1 (eHAND,
            Thing1), a mitochondrial ribosomal protein S16 pseudogene
            (Mrps16) and two CpG islands, complete sequence
          Length = 132671

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   tatcaagggataatgcccag 36
            ||||||||||||||||||||
Sbjct: 6043 tatcaagggataatgcccag 6062
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    taataataagcaaataaacttaaa 86
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112
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>ref|NG_004451.1| Rattus norvegicus RT1 class 1, M1, pseudogene 1 (RT1-M1-1) on
           chromosome 20
          Length = 2603

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 19  tcaagggataatgcccagcaataa 42
           ||||||||||| ||||||||||||
Sbjct: 747 tcaagggataaagcccagcaataa 724
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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ataatgcccagcaataaacc 45
             ||||||||||||||||||||
Sbjct: 49843 ataatgcccagcaataaacc 49824
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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 94   caggacctgactctggaccaaactgaag 121
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 94     caggacctgactctggaccaaactgaag 121
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aataagcaaataaacttaaa 86
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 94    caggacctgactctggaccaaactgaag 121
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 94     caggacctgactctggaccaaactgaag 121
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,588,322
Number of Sequences: 3902068
Number of extensions: 2588322
Number of successful extensions: 48988
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48916
Number of HSP's gapped (non-prelim): 59
length of query: 314
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 292
effective length of database: 17,147,199,772
effective search space: 5006982333424
effective search space used: 5006982333424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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