Clone Information

BLAST Search Result

Clone Name	rbart50f03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FA5_BOVIN (Q28107) Coagulation factor V precursor (Activated pro...	32	0.53
2	DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (...	31	0.69
3	YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12	31	0.90
4	UL49_EHV4 (Q00039) Tegument protein (Gene 11 protein)	30	1.2
5	CYC2_PSEAE (P29811) Probable adenylyl-sulfate kinase (EC 2.7.1.2...	30	1.2
6	DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (...	30	1.2
7	MCH1_NEUCR (Q9P3K8) Probable transporter MCH1	30	1.5
8	P53_FELCA (P41685) Cellular tumor antigen p53 (Tumor suppressor ...	30	1.5
9	MALK_YERPE (Q8ZAS8) Maltose/maltodextrin import ATP-binding prot...	29	2.6
10	EX5C_BUCAP (Q8K9B0) Exodeoxyribonuclease V gamma chain (EC 3.1.1...	29	3.4
11	COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochond...	28	4.5
12	HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated...	28	4.5
13	P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ...	28	5.8
14	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	28	5.8
15	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	5.8
16	SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor	28	5.8
17	IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)	28	5.8
18	HUNB_DROSL (O46256) Protein hunchback (Fragments)	28	5.8
19	BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homol...	28	5.8
20	Y674_YERPE (Q8CZS4) UPF0313 protein YPO0674/y3502/YP2990	28	7.6
21	DHBF_BACSU (P45745) Dimodular nonribosomal peptide synthetase	28	7.6
22	KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome prote...	28	7.6
23	JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem...	28	7.6
24	RIM15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC 2...	28	7.6
25	JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem...	28	7.6
26	VE2_HPV50 (Q80930) Regulatory protein E2	28	7.6
27	SNF1_YEAST (P06782) Carbon catabolite derepressing protein kinas...	28	7.6
28	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	27	9.9
29	PAXI_HUMAN (P49023) Paxillin	27	9.9
30	C5AP_STRP8 (Q8NZ80) C5a peptidase precursor (EC 3.4.21.-) (SCP)	27	9.9
31	C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)	27	9.9
32	AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clath...	27	9.9
33	YS89_CAEEL (Q09624) Hypothetical protein ZK945.9	27	9.9
34	OPA_DROME (P39768) Pair-rule protein odd-paired	27	9.9
35	APXL_HUMAN (Q13796) Apical-like protein (APXL protein)	27	9.9
36	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	27	9.9
37	IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)	27	9.9
38	DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-depen...	27	9.9
39	ZAN_PIG (Q28983) Zonadhesin precursor	27	9.9
40	TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylam...	27	9.9
41	C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)	27	9.9

>FA5_BOVIN (Q28107) Coagulation factor V precursor (Activated protein C|
            cofactor) [Contains: Coagulation factor V heavy chain;
            Coagulation factor V light chain]
          Length = 2211

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +3

Query: 147  QFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQ---------KRRALPTRLS 281
            Q +  TH  T AP++ +PDPT     P  R+  TQ         + RA+PT +S
Sbjct: 1122 QDSDPTHSTT-APSNRSPDPTHSTTAPSNRSPPTQPSQIPNYDLRNRAIPTDVS 1174

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>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -2

Query: 305 SGGRWLAGGKARRQCPPLLRPVGSPFRRVL 216
           +GG   AGG  RRQ PPL +P  SP+R  L
Sbjct: 30  AGGGGGAGG-GRRQTPPLAQPSASPYREAL 58

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>YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12|
          Length = 417

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 5   ERQHMIVCLGTPPLREKEKES-----ARSHLYHHEPHRYKHAPHGGRA 133
           E  H +V L  PP++EK ++S     A S  YHH  H    A    R+
Sbjct: 215 ENVHQLVQLALPPIKEKAQDSAYNDQAPSTSYHHHHHEQLEAGKSTRS 262

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>UL49_EHV4 (Q00039) Tegument protein (Gene 11 protein)|
          Length = 290

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 156 STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQP 293
           ST+HG+ L+PT +TP P     TP +R       RA     +  QP
Sbjct: 98  STSHGR-LSPTKTTPHPKSAGVTPPQRVPARPATRAAAPSATPTQP 142

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>CYC2_PSEAE (P29811) Probable adenylyl-sulfate kinase (EC 2.7.1.25) (APS|
           kinase) (Adenosine-5'phosphosulfate kinase) (ATP
           adenosine-5'-phosphosulfate 3'-phosphotransferase)
          Length = 214

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 161 HPWTNPSTY*QYSRPNGPSKHAGKASR 241
           H W   +T+   SRPN P +H  K+SR
Sbjct: 172 HGWNRTNTFPLKSRPNPPHRHKSKSSR 198

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>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 305 SGGRWLAGGKARRQCPPLLRPVGSPF 228
           SGGR   GG  RRQ PPL +P  SP+
Sbjct: 40  SGGR--GGGGGRRQQPPLAQPSASPY 63

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>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1|
          Length = 598

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 24/74 (32%), Positives = 33/74 (44%)
 Frame = -2

Query: 260 PPLLRPVGSPFRRVLMVRWVGSTASRC*GLSMGGTVKLTLLYPRAPHVERVCTGAVRGGR 81
           PP L+ VG P      V  VG T++    L  G    L    P+A HV+   +G +   R
Sbjct: 387 PPHLKFVGEPTSAATHVSIVGITSTLV-RLLTGSLTDLLAPSPQARHVQITSSGTLERKR 445

Query: 80  DVI*RILFLSLVAV 39
             + R+ FL   AV
Sbjct: 446 FSLSRVSFLLFFAV 459

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>P53_FELCA (P41685) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 223 RRKGEPTGRKSGGHCRRAFPPANQRPPDQTK 315
           R+KGEP      G  +RA PP+    P Q K
Sbjct: 283 RKKGEPCPEPPPGSTKRALPPSTSSTPPQKK 313

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>MALK_YERPE (Q8ZAS8) Maltose/maltodextrin import ATP-binding protein malK (EC|
           3.6.3.19)
          Length = 369

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -2

Query: 305 SGGRWLAGGKARRQCPPLLRPVGSPFRRVLMVRWVGSTASRC*GLSMGGTVKLTLLYPRA 126
           + G  L GGK   + PP  R +G  F+   +   +    +   GL + G VK   +Y R 
Sbjct: 56  TSGELLIGGKRMNEVPPSERGIGMVFQSYALYPHLSVAENMSFGLKLAG-VKKAEIYQRV 114

Query: 125 PHVERV 108
             V  V
Sbjct: 115 NQVAEV 120

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>EX5C_BUCAP (Q8K9B0) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)|
          Length = 1061

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 24  YVSEHHRYERKKKNPLDHI 80
           YVSEHH Y+  KK   +HI
Sbjct: 706 YVSEHHDYKNNKKEIFEHI 724

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>COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 552

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 126 GARIQQCQFNSTTHGQTLAPTSSTPDP-TDHQNTPERRADGTQKRRALPTRLSAGQPA 296
           G+ I   + N+T     + P++STP P  D +  P RR    ++        S+  P+
Sbjct: 104 GSNISNTKRNATVAAADIPPSTSTPRPQVDEELPPHRRRQAARRTAEQAASASSNAPS 161

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>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 156  STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRL---SAGQPA 296
            S +HG  L P +S+P P      P+RRA        L   L   SA QPA
Sbjct: 1027 SGSHGSLLLPPASSPPPPPPPPAPQRRATPPLAPGRLSQDLKLISASQPA 1076

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>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 226 RKGEPTGRKSGGHCRRAFPPANQRPPDQTK 315
           +KGEP      G  +RA PP+    P Q K
Sbjct: 279 KKGEPCPEPPPGSTKRALPPSTSSSPPQKK 308

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 32   GTPPLREKEKESARSHLYHHEPHRYKHAPH 121
            G  P RE+E+E  R     H PH + H  H
Sbjct: 2197 GDLPSREREQERGRPKDRKHRPHHHHHHHH 2226

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/92 (22%), Positives = 37/92 (40%)
 Frame = +2

Query: 38  PPLREKEKESARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPSTY*QYSRPNGPS 217
           P  R       +  + H  P + + +P   R   ++S  ++   ++PS   + +R   P+
Sbjct: 621 PKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSS-KHRKGSSPSRSTREARSPQPN 679

Query: 218 KHAGKASRRDAKAAGIADAPFRRPTSGHPIRR 313
           K    + R  A     +  P RR  S  P RR
Sbjct: 680 KRHSPSPRPRAPQTSSSPPPVRRGASSSPQRR 711

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>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor|
          Length = 402

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +2

Query: 44  LREKEKESARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPSTY*QYSRPNGPSKH 223
           L  KEK +  S  +HH PH + H PH             HP  +P  +  +      + H
Sbjct: 191 LATKEKTAEASQRHHH-PHPHSH-PHP----------HPHPHPHPHPHPHHGHQLHENAH 238

Query: 224 AGKASRRDAKAAGIADAPFRRPTSG 298
             ++ + D       D P   PTSG
Sbjct: 239 LSESPKPDT-----PDTPENPPTSG 258

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>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)|
          Length = 1235

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 183 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAAT 302
           P SS   P  H   P   R+ D    T  R A PTRLS G P A+
Sbjct: 820 PESSVTHPHHHALQPHLPRKVDTAAQTNSRLARPTRLSLGDPKAS 864

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>HUNB_DROSL (O46256) Protein hunchback (Fragments)|
          Length = 196

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 53  KEKESARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPS 181
           K++  +  H +HH  H Y   PH   +++  S     P  +P+
Sbjct: 11  KQEPISHHHHHHHAHHSYHQHPHDSNSNSNASSPHQSPLPSPN 53

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>BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homolog (Novel|
           amplified in breast cancer 1 homolog)
          Length = 633

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 162 THGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQ 290
           T G+T A  S +P P   + T E R  G  K +A PT L  G+
Sbjct: 379 TRGKTKATKSCSPPPPPSEPTSEGRDSG--KEKAGPTSLPLGK 419

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>Y674_YERPE (Q8CZS4) UPF0313 protein YPO0674/y3502/YP2990|
          Length = 781

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
 Frame = +2

Query: 2    MERQHMI----VCLGTPPLREKEKESARSHLYHHEPHRYKH--------------APHGG 127
            M  QH+I     CL   P  E+++E+ R+ L HH P   KH              A   G
Sbjct: 658  MGLQHLIGARRECLVPAPTLEEQREARRA-LRHHTPALTKHTSITRQRQPSNRAPAASAG 716

Query: 128  RADTTMSV*QYHPWTNPSTY*QYSRPNGPSKHAGKASRRDAKAAGIADAPFRRPTSG 298
            +   T++       +  +     +  +  + H+  A+++ A   G+  A   +P++G
Sbjct: 717  KKAPTVANGTSSAHSTSANQSTSANQSTSAAHSTLATKKSAGKTGVNKAAVNKPSAG 773

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>DHBF_BACSU (P45745) Dimodular nonribosomal peptide synthetase|
          Length = 2378

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 297  PLVGRRKGASAMPAAFASRRLAFPACFDGP 208
            P + R +    +P +FA RRL F  C +GP
Sbjct: 1040 PALQRAERPEKIPLSFAQRRLWFLHCLEGP 1069

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>KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome protein) (Adhesion|
           molecule-like X-linked)
          Length = 680

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 71  RSHLYHHEPHRYKHAP 118
           RSHL H  PH YK +P
Sbjct: 662 RSHLKHRHPHHYKPSP 677

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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 192  STPDPTDHQNTPERRADGTQKRRALPTRLSAGQP 293
            ++P P  HQ TP   ADG      +P R S+ +P
Sbjct: 899  NSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEP 932

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>RIM15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC 2.7.11.1)|
          Length = 1770

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 24   YVSEHHRYERKKKNPLDHISXXXXXXXXXXLHMGGARIQQCQFNSTTHGQTLAPTSST 197
            + S+H +Y R KK+ L                  G + +  +++ST++  ++ PT ST
Sbjct: 990  FTSDHKQYNRSKKSSL------------------GQQYEHSEYSSTSNSHSMTPTPST 1029

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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 192 STPDPTDHQNTPERRADGTQKRRALPTRLSAGQP 293
           ++P P  HQ TP   ADG      +P R S+ +P
Sbjct: 718 NSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEP 751

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>VE2_HPV50 (Q80930) Regulatory protein E2|
          Length = 396

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 153 NSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 314
           N T H    + + S   P D Q  P    D +Q+ R+      +GQP A +  E
Sbjct: 198 NKTIHSSVTSSSRSAFGPADEQPGPSTSYDKSQQERS-----GSGQPKALQDTE 246

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>SNF1_YEAST (P06782) Carbon catabolite derepressing protein kinase (EC|
           2.7.11.1)
          Length = 633

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 74  SHLYHHEPHRYKHAPHGGRADT 139
           SH +HH  H + H  HGG   T
Sbjct: 17  SHHHHHHHHHHHHHGHGGSNST 38

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 174 TLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAAT 302
           T AP+S       H NT E +  G  +    P+ LS   PA T
Sbjct: 268 TQAPSSLMETLEQHLNTLEGKKPGNNEGSGAPSPLSKSSPATT 310

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>PAXI_HUMAN (P49023) Paxillin|
          Length = 591

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 138 QQCQFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAAT 302
           QQ Q +S  +G + A TSS  +P D   +P  R    +   + P +  + +P+ T
Sbjct: 79  QQPQSSSPVYGSS-AKTSSVSNPQDSVGSPCSRVGEEEHVYSFPNKQKSAEPSPT 132

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>C5AP_STRP8 (Q8NZ80) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1150

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 186  TSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 314
            +  TP  T  +  P R  +    +RAL T+ SA     T +D+
Sbjct: 1074 SGQTPGKTPQKGQPSRTLEKRSSKRALATKASARDQLPTTNDK 1116

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>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1184

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 186  TSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 314
            +  TP  T  +  P R  +    +RAL T+ SA     T +D+
Sbjct: 1108 SGQTPGKTPQKGQPSRTLEKRSSKRALATKASARDQLPTTNDK 1150

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>AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 907

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 174 TLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAAT 302
           T AP+S       H NT E +  G  +    P+ LS   PA T
Sbjct: 268 TQAPSSLMETLEQHLNTLEGKKPGNNEGSGAPSPLSKSSPATT 310

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>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9|
          Length = 3178

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 153 NSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAG--QPAATRSDE 314
           +ST    T AP++ST  P+   +TP   A  +    A  T+ S    Q + T   E
Sbjct: 486 SSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTKSE 541

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>OPA_DROME (P39768) Pair-rule protein odd-paired|
          Length = 609

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
 Frame = +2

Query: 83  YHHEPHRYKHAPHGGRADTTMSV*Q------YHPWTN---PSTY*QYSRPNGPSK 220
           +HH PH ++ AP  G A  + S+        YHP      PS +   + P+G ++
Sbjct: 529 HHHHPHHHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTTAPSGSAE 583

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>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)|
          Length = 1616

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 229  KGEPTGRKSGGHCRRAFPPANQRPPDQ 309
            +G+ T R++   CR   P + Q PP Q
Sbjct: 958  EGQSTPRQADAQCREGSPGSQQHPPSQ 984

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 174 TLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAAT 302
           T AP+S       H NT E +  G  +    P+ LS   PA T
Sbjct: 268 TQAPSSLMETLEQHLNTLEGKKPGNNEGSGAPSPLSKSSPATT 310

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>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)|
          Length = 1233

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 183 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAAT 302
           P SS   P  H   P   R+ D    T  R A PTRLS G P A+
Sbjct: 820 PESSLTHPHHHVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKAS 864

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>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 17  MIVCLGTPPLREKEKESARSHLYHHEPH--RYKHAPHGGRADTTMSV*QYHPWTN 175
           M++  G PPL  K   SA S    H  H     H+ H G A  T      +P+TN
Sbjct: 68  MLISAGLPPL--KASHSAHSTHSAHSTHSTHSAHSTHAGHAGHTSLPQCINPFTN 120

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>ZAN_PIG (Q28983) Zonadhesin precursor|
          Length = 2476

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 171 QTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTR 275
           +T  PT  T  PT+   TP  R     +R  +PT+
Sbjct: 601 RTTTPTIRTTTPTERTTTPTIRTTTPTERTTIPTK 635

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>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline|
           chlorohydrolase)
          Length = 476

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 153 NSTTHGQTLAPTSSTPDPTDHQNT 224
           +ST  G   +P SSTP PT H+++
Sbjct: 48  SSTPPGWQCSPASSTPTPTSHKSS 71

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>C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1169

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 186  TSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 314
            +  TP  T  +  P R  +    +RAL T+ SA     T +D+
Sbjct: 1093 SGQTPGKTPQKGQPSRTLEKRSSKRALATKASARDQLPTTNDK 1135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,930,966
Number of Sequences: 219361
Number of extensions: 1073875
Number of successful extensions: 3519
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result