ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 638 e-180
2gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 289 3e-75
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 212 6e-52
4gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 204 2e-49
5gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 204 2e-49
6gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 202 6e-49
7gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, com... 161 2e-36
8emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 159 8e-36
9gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydratio... 68 2e-08
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
11dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
12dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
13dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
14emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.022
15gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 1.3
16emb|Z73906.1|CED2030 Caenorhabditis elegans Cosmid D2030, comple... 42 1.3
17emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 42 1.3
18emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 42 1.3
19gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 42 1.3
20gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence 42 1.3
21gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 5.3
22ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 5.3
23gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 5.3
24emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 i... 40 5.3
25emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 5.3
26emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 5.3
27gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 5.3
28gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 40 5.3
29dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 5.3
30dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 5.3
31gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 5.3
32dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.3
33dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 5.3 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  638 bits (322), Expect = e-180
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                        
Query: 63   ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 123  gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                        
Query: 183  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 242
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975

                                                                        
Query: 243  tcaaagacgatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacaca 302
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 974  tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915

                                                                        
Query: 303  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  cgccaacaatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctct 855

                                              
Query: 363  gggcttgtgctcgcctgaaggggcggcggccttg 396
            ||||||||||||||||||||||||||||||||||
Sbjct: 854  gggcttgtgctcgcctgaaggggcggcggccttg 821
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>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score =  289 bits (146), Expect = 3e-75
 Identities = 146/146 (100%)
 Strand = Plus / Minus

                                                                        
Query: 251  gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187

                                                                        
Query: 311  atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127

                                      
Query: 371  gctcgcctgaaggggcggcggccttg 396
            ||||||||||||||||||||||||||
Sbjct: 2126 gctcgcctgaaggggcggcggccttg 2101
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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  212 bits (107), Expect = 6e-52
 Identities = 186/207 (89%), Gaps = 4/207 (1%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 250
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978

                                                                        
Query: 251  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 309
            |||||| |||||| | ||||||||  |||||| | |||||||||||| ||||||||||||
Sbjct: 977  gatcaacccctcccaccttgacaccaacttaa-cgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 310  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 369
            |||| ||| |||||||||| | |||||||||| ||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgagtctcggg-cacggcggcgatcaagcgctgggcttg 860

                                       
Query: 370  tgctcgcctgaaggggcggcggccttg 396
            |||||||||| || |||||||||||||
Sbjct: 859  tgctcgcctgcagcggcggcggccttg 833



 Score =  123 bits (62), Expect = 5e-25
 Identities = 105/116 (90%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 66   ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 125
            |||||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 126  ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 181
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028
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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  204 bits (103), Expect = 2e-49
 Identities = 185/207 (89%), Gaps = 4/207 (1%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 250
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951

                                                                        
Query: 251  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 309
            |||||| |||||| | ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 950  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891

                                                                        
Query: 310  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 369
            |||| ||| ||| |||||| | |||||||||| |||||||||||| |||| |||||||||
Sbjct: 890  aattcaatcgagctccggtcacgagtctcggg-cacggcggcgattaagcgctgggcttg 832

                                       
Query: 370  tgctcgcctgaaggggcggcggccttg 396
            |||||||||| ||||||||||||||||
Sbjct: 831  tgctcgcctgcaggggcggcggccttg 805



 Score =  147 bits (74), Expect = 3e-32
 Identities = 114/125 (91%), Gaps = 8/125 (6%)
 Strand = Plus / Minus

                                                                        
Query: 57   atactgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaa 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1116 atactgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aa 1058

                                                                        
Query: 117  gtgcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaa 176
            ||||||      ||||| ||| |||||| |||||||||||||||||||||||| ||||||
Sbjct: 1057 gtgccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaa 1005

                 
Query: 177  ctgaa 181
            |||||
Sbjct: 1004 ctgaa 1000
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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  204 bits (103), Expect = 2e-49
 Identities = 184/207 (88%), Gaps = 3/207 (1%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 250
            |||||||||| || ||||| |||||||  |||||||||||| ||||||||||||||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979

                                                                        
Query: 251  gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 309
            |||||| |||||| | ||||||||  ||||| || |||||||||||| ||||||||||||
Sbjct: 978  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919

                                                                        
Query: 310  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 369
            |||| ||| |||||||||| | | |||||||| ||||||||||||||||| |||||||||
Sbjct: 918  aattcaatcgaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttg 860

                                       
Query: 370  tgctcgcctgaaggggcggcggccttg 396
            |||||||||| || |||||||||||||
Sbjct: 859  tgctcgcctgtagcggcggcggccttg 833



 Score =  121 bits (61), Expect = 2e-24
 Identities = 104/116 (89%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 66   ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 125
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 126  ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 181
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029
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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  202 bits (102), Expect = 6e-49
 Identities = 176/198 (88%), Gaps = 2/198 (1%)
 Strand = Plus / Minus

                                                                        
Query: 200  aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 259
            |||| ||||| |||||||  |||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979

                                                                        
Query: 260  ctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 318
            |||| | ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| 
Sbjct: 978  ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919

                                                                        
Query: 319  gaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcgcct 378
            |||||||||| | | |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 918  gaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttgtgctcgcct 860

                              
Query: 379  gaaggggcggcggccttg 396
            | || |||||||||||||
Sbjct: 859  gtagcggcggcggccttg 842



 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Minus

                                                                        
Query: 35   tcttcacaaaatgcaacaatatatactgggcggaaatctttaatatcaaggcataatgcc 94
            ||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tcttcacaacatgcagcaatatgtactgggcggaaatctttaatatcaaggcataatgcc 1110

                                 
Query: 95   cagcaataaaccaatacacaa 115
            |||||||||||||||||||||
Sbjct: 1109 cagcaataaaccaatacacaa 1089
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>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds
          Length = 808

 Score =  161 bits (81), Expect = 2e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                       
Query: 316 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 749

                                
Query: 376 cctgaaggggcggcggccttg 396
           |||||||||||||||||||||
Sbjct: 748 cctgaaggggcggcggccttg 728
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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score =  159 bits (80), Expect = 8e-36
 Identities = 165/188 (87%), Gaps = 4/188 (2%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 250
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976

                                                                        
Query: 251  gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 309
            |||||| |||| ||| ||||||||  |||| ||| |||||||||||| ||||||||||||
Sbjct: 975  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917

                                                                        
Query: 310  aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 369
            |||| ||| | |||||||| | ||||||| ||||||||||||| ||||||  |||| |||
Sbjct: 916  aattcaatcggggtccggtcacgagtctc-gggcacggcggcgttcaagcgttgggattg 858

                    
Query: 370  tgctcgcc 377
            ||||||||
Sbjct: 857  tgctcgcc 850



 Score =  105 bits (53), Expect = 1e-19
 Identities = 96/107 (89%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 75   taatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgtaataataagc 134
            ||||||||||||||||||||||||||  ||||||||||| ||| ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc---ataataagt 1072

                                                           
Query: 135  aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 181
            ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1026
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>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible
            protein 1 mRNA, complete cds
          Length = 1315

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 47   gcaacaatatatactgggcggaaatctttaatatcaaggcataatgcccagcaataaacc 106
            |||||||||||| |||||| |||||| |||||| ||||||| ||||||||||   |||||
Sbjct: 1278 gcaacaatatattctgggcagaaatcattaataccaaggcagaatgcccagcccaaaacc 1219

                  
Query: 107  aataca 112
            ||||||
Sbjct: 1218 aataca 1213
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 47       gcaacaatatatactgggcggaaatctttaatatcaaggcataatgcccagcaataaacc 106
                |||||||||||| |||||| |||||| |||||| ||||||| ||||||||||   |||||
Sbjct: 27184009 gcaacaatatattctgggcagaaatcattaataccaaggcagaatgcccagcccaaaacc 27184068

                      
Query: 107      aataca 112
                ||||||
Sbjct: 27184069 aataca 27184074
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>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 47    gcaacaatatatactgggcggaaatctttaatatcaaggcataatgcccagcaataaacc 106
             |||||||||||| |||||| |||||| |||||| ||||||| ||||||||||   |||||
Sbjct: 80458 gcaacaatatattctgggcagaaatcattaataccaaggcagaatgcccagcccaaaacc 80517

                   
Query: 107   aataca 112
             ||||||
Sbjct: 80518 aataca 80523
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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 47    gcaacaatatatactgggcggaaatctttaatatcaaggcataatgcccagcaataaacc 106
             |||||||||||| |||||| |||||| |||||| ||||||| ||||||||||   |||||
Sbjct: 34680 gcaacaatatattctgggcagaaatcattaataccaaggcagaatgcccagcccaaaacc 34739

                   
Query: 107   aataca 112
             ||||||
Sbjct: 34740 aataca 34745
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>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full
            insert sequence
          Length = 1292

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 47   gcaacaatatatactgggcggaaatctttaatatcaaggcataatgcccagcaataaacc 106
            |||||||||||| |||||| |||||| |||||| ||||||| ||||||||||   |||||
Sbjct: 1290 gcaacaatatattctgggcagaaatcattaataccaaggcagaatgcccagcccaaaacc 1231

                  
Query: 107  aataca 112
            ||||||
Sbjct: 1230 aataca 1225
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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 161    ctgactctggaccaaactgaagcc 184
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
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>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 190    acccaaactgaacacaagcat 210
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261
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>emb|Z73906.1|CED2030 Caenorhabditis elegans Cosmid D2030, complete sequence
          Length = 42665

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 33   tatcttcacaaaatgcaacaatata 57
            ||||||||||||||||| |||||||
Sbjct: 2779 tatcttcacaaaatgcaccaatata 2755
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     caataaaccaatacacaaagt 118
              |||||||||||||||||||||
Sbjct: 156591 caataaaccaatacacaaagt 156571
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    caataaaccaatacacaaagt 118
             |||||||||||||||||||||
Sbjct: 34762 caataaaccaatacacaaagt 34782
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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    cataatgcccagcaataaacc 106
             |||||||||||||||||||||
Sbjct: 49844 cataatgcccagcaataaacc 49824
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>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence
          Length = 107815

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atactgtatatatcttcacaa 43
             |||||||||||||||||||||
Sbjct: 55557 atactgtatatatcttcacaa 55577
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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    aataagcaaataaacttaaa 147
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  aaataaacttaaacaacatc 154
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 123    gtaataataagcaaataaacttaaacaa 150
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
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>emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 in linkage group 1,
            complete sequence
          Length = 153891

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   acatactgtatatatcttca 40
            ||||||||||||||||||||
Sbjct: 5843 acatactgtatatatcttca 5824
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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   taataataagcaaataaacttaaa 147
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   taataataagcaaataaacttaaa 147
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 30      atatatcttcacaaaatgcaacaa 53
               ||||||||||||||||| ||||||
Sbjct: 1527853 atatatcttcacaaaattcaacaa 1527876
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atactgtatatatcttcaca 42
             ||||||||||||||||||||
Sbjct: 87284 atactgtatatatcttcaca 87265
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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 155  caggacctgactctggaccaaactgaag 182
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 155    caggacctgactctggaccaaactgaag 182
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    aataagcaaataaacttaaa 147
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 155   caggacctgactctggaccaaactgaag 182
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 155    caggacctgactctggaccaaactgaag 182
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,449,037
Number of Sequences: 3902068
Number of extensions: 3449037
Number of successful extensions: 66680
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66572
Number of HSP's gapped (non-prelim): 95
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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