ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009568.1| Triticum aestivum clone wre1n.pk0015.d2:fis, full... 44 0.015
2gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, comp... 44 0.015
3emb|AL049823.14|HSJ813O16 Human DNA sequence from clone RP4-813O... 42 0.057
4emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, ... 40 0.23
5emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BA... 40 0.23
6gb|AC116336.2| Homo sapiens chromosome 5 clone CTD-2306L10, comp... 40 0.23
7emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, B... 40 0.23
8gb|AC149264.8| Medicago truncatula clone mth2-78f9, complete seq... 38 0.90
9gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complet... 38 0.90
10emb|BX511189.4| Zebrafish DNA sequence from clone DKEY-28G23 in ... 38 0.90
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 0.90
12dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic D... 38 0.90
13gb|AY689437.1| Deerpox virus W-1170-84, complete genome 36 3.5
14ref|NM_101588.3| Arabidopsis thaliana unknown protein AT1G17270 ... 36 3.5
15gb|AC116370.17| Mus musculus chromosome 3, clone RP24-113D8, com... 36 3.5
16gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome... 36 3.5
17gb|BC051909.1| Homo sapiens coagulation factor II (thrombin) rec... 36 3.5
18gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, co... 36 3.5
19gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete se... 36 3.5
20emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in... 36 3.5
21gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 geno... 36 3.5
22emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on ch... 36 3.5
23emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chr... 36 3.5
24emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chr... 36 3.5
25ref|NM_001992.2| Homo sapiens coagulation factor II (thrombin) r... 36 3.5
26emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4,... 36 3.5
27gb|BC002464.2| Homo sapiens coagulation factor II (thrombin) rec... 36 3.5
28gb|AC104235.3| Homo sapiens chromosome 11, clone RP11-12N12, com... 36 3.5
29gb|AC025188.8| Homo sapiens chromosome 5 clone CTD-2384B11, comp... 36 3.5
30gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 36 3.5
31gb|AF391809.2|AF391809 Homo sapiens coagulation factor II (throm... 36 3.5
32emb|BX470224.5| Zebrafish DNA sequence from clone DKEY-13N15 in ... 36 3.5
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
37emb|BX816116.1|CNS0AD85 Arabidopsis thaliana Full-length cDNA Co... 36 3.5
38emb|BX816304.1|CNS0AD3P Arabidopsis thaliana Full-length cDNA Co... 36 3.5
39gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosom... 36 3.5
40gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, comple... 36 3.5
41gb|AF028727.1|AF028727 Papio hamadryas thrombin receptor (bthr12... 36 3.5
42dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
43gb|BT002770.1| Arabidopsis thaliana clone RAFL15-04-L09 (R20233)... 36 3.5
44emb|BX005154.6| Zebrafish DNA sequence from clone CH211-288G17 i... 36 3.5
45dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
46gb|AC079115.7| Homo sapiens BAC clone RP11-102M8 from 2, complet... 36 3.5
47dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
48dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
49gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Can... 36 3.5
50gb|AC159465.2| Pan troglodytes BAC clone CH251-325K10 from chrom... 36 3.5
51gb|AC171315.9| Mus musculus chromosome 3, clone RP23-240N19, com... 36 3.5
52gb|AY771596.1| Homo sapiens cell proliferation-inducing protein ... 36 3.5
53emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4,... 36 3.5
54emb|CT030663.7| Mouse DNA sequence from clone RP23-233E5 on chro... 36 3.5
55gb|AC135511.4| Mus musculus BAC clone RP23-255B19 from 3, comple... 36 3.5
56gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, comple... 36 3.5
57gb|AC150285.2| Mus musculus BAC clone RP23-340J3 from 7, complet... 36 3.5
58gb|AC171325.5| Mus musculus chromosome 3, clone RP23-124B15, com... 36 3.5
59gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Can... 36 3.5
60gb|M62424.1|HUMTHRR Human thrombin receptor mRNA, complete cds 36 3.5 
>gb|BT009568.1| Triticum aestivum clone wre1n.pk0015.d2:fis, full insert mRNA
            sequence
          Length = 1165

 Score = 44.1 bits (22), Expect = 0.015
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 11   ctctgtttccataatttacattgaaa 36
            ||||||||| ||||||||||||||||
Sbjct: 1077 ctctgtttcgataatttacattgaaa 1052
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>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 44.1 bits (22), Expect = 0.015
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 6     ttttcctctgtttccataattt 27
             ||||||||||||||||||||||
Sbjct: 37625 ttttcctctgtttccataattt 37646
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>emb|AL049823.14|HSJ813O16 Human DNA sequence from clone RP4-813O16 on chromosome 6q23.2-24.3
             Contains STSs and GSSs, complete sequence
          Length = 155609

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 12    tctgtttccataatttacattgaaa 36
             ||||||| |||||||||||||||||
Sbjct: 37157 tctgttttcataatttacattgaaa 37133
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>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73
          Length = 194862

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      cattttcctctgtttccata 23
              ||||||||||||||||||||
Sbjct: 154443 cattttcctctgtttccata 154462
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>emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project)
          Length = 122322

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      cattttcctctgtttccata 23
              ||||||||||||||||||||
Sbjct: 113390 cattttcctctgtttccata 113371
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>gb|AC116336.2| Homo sapiens chromosome 5 clone CTD-2306L10, complete sequence
          Length = 145859

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tcccattttcctctgtttcc 20
              ||||||||||||||||||||
Sbjct: 103919 tcccattttcctctgtttcc 103938
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>emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21
          Length = 77860

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     cattttcctctgtttccata 23
             ||||||||||||||||||||
Sbjct: 53328 cattttcctctgtttccata 53347
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>gb|AC149264.8| Medicago truncatula clone mth2-78f9, complete sequence
          Length = 120481

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 12    tctgtttccataatttacattga 34
             ||||||||||| |||||||||||
Sbjct: 41735 tctgtttccattatttacattga 41757
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>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence
          Length = 79804

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     cattttcctctgtttccat 22
             |||||||||||||||||||
Sbjct: 38041 cattttcctctgtttccat 38023
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>emb|BX511189.4| Zebrafish DNA sequence from clone DKEY-28G23 in linkage group 17,
             complete sequence
          Length = 112714

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     tttcctctgtttccataat 25
             |||||||||||||||||||
Sbjct: 64616 tttcctctgtttccataat 64634
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 13       ctgtttccataatttacat 31
                |||||||||||||||||||
Sbjct: 24454735 ctgtttccataatttacat 24454753
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>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0012B02
          Length = 149807

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    ctgtttccataatttacat 31
             |||||||||||||||||||
Sbjct: 66208 ctgtttccataatttacat 66226
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>gb|AY689437.1| Deerpox virus W-1170-84, complete genome
          Length = 170560

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttccataatttacattga 34
              ||||||||||||||||||
Sbjct: 140538 ttccataatttacattga 140521
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>ref|NM_101588.3| Arabidopsis thaliana unknown protein AT1G17270 mRNA, complete cds
          Length = 1958

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    attttcctctgtttccat 22
            ||||||||||||||||||
Sbjct: 1785 attttcctctgtttccat 1802
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>gb|AC116370.17| Mus musculus chromosome 3, clone RP24-113D8, complete sequence
          Length = 155613

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      cattttcctctgtttcca 21
              ||||||||||||||||||
Sbjct: 145243 cattttcctctgtttcca 145260



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      cattttcctctgtttcca 21
              ||||||||||||||||||
Sbjct: 110560 cattttcctctgtttcca 110577



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 11230 cattttcctctgtttcca 11213
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>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0109A13, complete sequence
          Length = 134258

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccataatttacattga 34
             ||||||||||||||||||
Sbjct: 59266 ttccataatttacattga 59249
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>gb|BC051909.1| Homo sapiens coagulation factor II (thrombin) receptor, mRNA (cDNA
            clone MGC:60377 IMAGE:6172703), complete cds
          Length = 3448

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    ttttcctctgtttccataattt 27
            ||||| ||||||||||||||||
Sbjct: 2115 ttttcatctgtttccataattt 2094
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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      attttcctctgtttccat 22
              ||||||||||||||||||
Sbjct: 158835 attttcctctgtttccat 158818
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>gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete sequence
          Length = 195266

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      ccattttcctctgtttcc 20
              ||||||||||||||||||
Sbjct: 117169 ccattttcctctgtttcc 117186
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>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15,
             complete sequence
          Length = 194916

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     cccattttcctctgtttc 19
             ||||||||||||||||||
Sbjct: 98562 cccattttcctctgtttc 98545
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>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     attttcctctgtttccat 22
             ||||||||||||||||||
Sbjct: 14015 attttcctctgtttccat 14032
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>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete
             sequence
          Length = 139968

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     ttttcctctgtttccata 23
             ||||||||||||||||||
Sbjct: 13682 ttttcctctgtttccata 13699
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>emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chromosome 13 Contains a
             DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1)
             pseudogene, complete sequence
          Length = 157135

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     cccattttcctctgtttc 19
             ||||||||||||||||||
Sbjct: 70145 cccattttcctctgtttc 70128
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>emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chromosome 1p12-13.3
             Contains a high density lipoprotein binding protein
             (vigilin) (HDLBP) pseudogene, complete sequence
          Length = 92514

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    gtttccataatttacatt 32
             ||||||||||||||||||
Sbjct: 47041 gtttccataatttacatt 47024
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>ref|NM_001992.2| Homo sapiens coagulation factor II (thrombin) receptor (F2R), mRNA
          Length = 3592

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    ttttcctctgtttccataattt 27
            ||||| ||||||||||||||||
Sbjct: 2273 ttttcatctgtttccataattt 2252
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>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07,
             complete sequence
          Length = 143585

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccataatttacattga 34
             ||||||||||||||||||
Sbjct: 49166 ttccataatttacattga 49149
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>gb|BC002464.2| Homo sapiens coagulation factor II (thrombin) receptor, mRNA (cDNA
            clone MGC:1197 IMAGE:3343051), complete cds
          Length = 3470

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    ttttcctctgtttccataattt 27
            ||||| ||||||||||||||||
Sbjct: 2109 ttttcatctgtttccataattt 2088
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>gb|AC104235.3| Homo sapiens chromosome 11, clone RP11-12N12, complete sequence
          Length = 162139

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 40929 cattttcctctgtttcca 40912
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>gb|AC025188.8| Homo sapiens chromosome 5 clone CTD-2384B11, complete sequence
          Length = 143335

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 6     ttttcctctgtttccataattt 27
             ||||| ||||||||||||||||
Sbjct: 75737 ttttcatctgtttccataattt 75716
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 3       ccattttcctctgtttcc 20
               ||||||||||||||||||
Sbjct: 1252577 ccattttcctctgtttcc 1252594
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>gb|AF391809.2|AF391809 Homo sapiens coagulation factor II (thrombin) receptor (F2R) gene,
             complete cds
          Length = 24771

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 6     ttttcctctgtttccataattt 27
             ||||| ||||||||||||||||
Sbjct: 19996 ttttcatctgtttccataattt 19975
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>emb|BX470224.5| Zebrafish DNA sequence from clone DKEY-13N15 in linkage group 5, complete
              sequence
          Length = 244492

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     tccataatttacattgaa 35
              ||||||||||||||||||
Sbjct: 239140 tccataatttacattgaa 239123
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 17       ttccataatttacattga 34
                ||||||||||||||||||
Sbjct: 26981465 ttccataatttacattga 26981448



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 17      ttccataatttacattga 34
               ||||||||||||||||||
Sbjct: 7258309 ttccataatttacattga 7258326
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 17      ttccataatttacattga 34
               ||||||||||||||||||
Sbjct: 7708333 ttccataatttacattga 7708316



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 17      ttccataatttacattga 34
               ||||||||||||||||||
Sbjct: 3297617 ttccataatttacattga 3297600
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 17       ttccataatttacattga 34
                ||||||||||||||||||
Sbjct: 14832924 ttccataatttacattga 14832907
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 17       ttccataatttacattga 34
                ||||||||||||||||||
Sbjct: 23043413 ttccataatttacattga 23043396
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>emb|BX816116.1|CNS0AD85 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH29ZC09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1839

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    attttcctctgtttccat 22
            ||||||||||||||||||
Sbjct: 1752 attttcctctgtttccat 1769
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>emb|BX816304.1|CNS0AD3P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH3ZE09 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1936

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    attttcctctgtttccat 22
            ||||||||||||||||||
Sbjct: 1785 attttcctctgtttccat 1802
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>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete
             sequence
          Length = 197149

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     attttcctctgtttccat 22
             ||||||||||||||||||
Sbjct: 72110 attttcctctgtttccat 72093
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>gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, complete sequence
          Length = 178181

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     tcccattttcctctgttt 18
             ||||||||||||||||||
Sbjct: 42956 tcccattttcctctgttt 42939
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>gb|AF028727.1|AF028727 Papio hamadryas thrombin receptor (bthr12) mRNA, complete cds
          Length = 3764

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    ttttcctctgtttccataattt 27
            ||||| ||||||||||||||||
Sbjct: 2460 ttttcatctgtttccataattt 2439
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>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415C01
          Length = 138701

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttccataatttacattga 34
              ||||||||||||||||||
Sbjct: 113819 ttccataatttacattga 113802
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>gb|BT002770.1| Arabidopsis thaliana clone RAFL15-04-L09 (R20233) unknown protein
            (At1g17270) mRNA, complete cds
          Length = 1986

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    attttcctctgtttccat 22
            ||||||||||||||||||
Sbjct: 1785 attttcctctgtttccat 1802
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>emb|BX005154.6| Zebrafish DNA sequence from clone CH211-288G17 in linkage group 19,
             complete sequence
          Length = 164384

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tgtttccataatttacat 31
             ||||||||||||||||||
Sbjct: 16748 tgtttccataatttacat 16731
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>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0069P02
          Length = 163033

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccataatttacattga 34
             ||||||||||||||||||
Sbjct: 13549 ttccataatttacattga 13532
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>gb|AC079115.7| Homo sapiens BAC clone RP11-102M8 from 2, complete sequence
          Length = 177285

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 11     ctctgtttccataatttacatt 32
              ||||||||||||||| ||||||
Sbjct: 127294 ctctgtttccataatctacatt 127273
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>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0079K11
          Length = 130082

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccataatttacattga 34
             ||||||||||||||||||
Sbjct: 75895 ttccataatttacattga 75878
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>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0011D16
          Length = 177329

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttccataatttacattga 34
              ||||||||||||||||||
Sbjct: 173930 ttccataatttacattga 173913
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>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198332

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 1      tcccattttcctctgtttccat 22
              |||||||||||| |||||||||
Sbjct: 134918 tcccattttcctttgtttccat 134897
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>gb|AC159465.2| Pan troglodytes BAC clone CH251-325K10 from chromosome unknown,
             complete sequence
          Length = 174268

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     tcccattttcctctgttt 18
             ||||||||||||||||||
Sbjct: 40189 tcccattttcctctgttt 40172
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>gb|AC171315.9| Mus musculus chromosome 3, clone RP23-240N19, complete sequence
          Length = 181804

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 72418 cattttcctctgtttcca 72435



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 41409 cattttcctctgtttcca 41392



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    cattttcctctgtttcca 21
            ||||||||||||||||||
Sbjct: 6722 cattttcctctgtttcca 6705
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>gb|AY771596.1| Homo sapiens cell proliferation-inducing protein 18 mRNA, complete
           cds
          Length = 2403

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 6   ttttcctctgtttccataattt 27
           ||||| ||||||||||||||||
Sbjct: 750 ttttcatctgtttccataattt 729
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>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13,
              complete sequence
          Length = 143298

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     ttccataatttacattga 34
              ||||||||||||||||||
Sbjct: 122046 ttccataatttacattga 122063
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>emb|CT030663.7| Mouse DNA sequence from clone RP23-233E5 on chromosome 12, complete
             sequence
          Length = 121803

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    ctctgtttccataattta 28
             ||||||||||||||||||
Sbjct: 86036 ctctgtttccataattta 86053
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>gb|AC135511.4| Mus musculus BAC clone RP23-255B19 from 3, complete sequence
          Length = 195384

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      cattttcctctgtttcca 21
              ||||||||||||||||||
Sbjct: 130171 cattttcctctgtttcca 130154



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 95488 cattttcctctgtttcca 95471
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>gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, complete sequence
          Length = 219213

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     ctctgtttccataattta 28
              ||||||||||||||||||
Sbjct: 211984 ctctgtttccataattta 212001
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>gb|AC150285.2| Mus musculus BAC clone RP23-340J3 from 7, complete sequence
          Length = 182333

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 11     ctctgtttccataattta 28
              ||||||||||||||||||
Sbjct: 150697 ctctgtttccataattta 150714
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>gb|AC171325.5| Mus musculus chromosome 3, clone RP23-124B15, complete sequence
          Length = 191795

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      cattttcctctgtttcca 21
              ||||||||||||||||||
Sbjct: 189068 cattttcctctgtttcca 189051



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      cattttcctctgtttcca 21
              ||||||||||||||||||
Sbjct: 154368 cattttcctctgtttcca 154351



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     cattttcctctgtttcca 21
             ||||||||||||||||||
Sbjct: 65776 cattttcctctgtttcca 65793
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>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189395

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 1     tcccattttcctctgtttccat 22
             |||||||||||| |||||||||
Sbjct: 18396 tcccattttcctttgtttccat 18417
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>gb|M62424.1|HUMTHRR Human thrombin receptor mRNA, complete cds
          Length = 3472

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    ttttcctctgtttccataattt 27
            ||||| ||||||||||||||||
Sbjct: 2153 ttttcatctgtttccataattt 2132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,411
Number of Sequences: 3902068
Number of extensions: 553411
Number of successful extensions: 155142
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154727
Number of HSP's gapped (non-prelim): 415
length of query: 36
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 16
effective length of database: 17,155,003,908
effective search space: 274480062528
effective search space used: 274480062528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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