ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHSB_PHAVU (P02853) Phaseolin, beta-type precursor 28 4.7
2PHSA_PHAVU (P07219) Phaseolin, alpha-type precursor 28 4.7
3Y832_METJA (Q58242) Hypothetical protein MJ0832 [Contains: Mja r... 28 6.2
4ZFP14_MOUSE (P10755) Zinc finger protein 14 (Zfp-14) (Krox-9 pro... 28 8.1
5S22A4_RAT (Q9R141) Organic cation/carnitine transporter 1 (Solut... 28 8.1
6ZFP14_HUMAN (Q9HCL3) Zinc finger protein 14 homolog (Zfp-14) 28 8.1

>PHSB_PHAVU (P02853) Phaseolin, beta-type precursor|
          Length = 421

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 123 IRRSVHINMRDIH-YFLKSYELQQEYIPEGKKH---TGFRKNLEQV 248
           I+ ++ +N   IH +FL S E QQ Y+ E  KH     F    E++
Sbjct: 156 IQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEI 201



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>PHSA_PHAVU (P07219) Phaseolin, alpha-type precursor|
          Length = 436

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 123 IRRSVHINMRDIH-YFLKSYELQQEYIPEGKKH---TGFRKNLEQV 248
           I+ ++ +N   IH +FL S E QQ Y+ E  KH     F    E++
Sbjct: 157 IQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEI 202



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>Y832_METJA (Q58242) Hypothetical protein MJ0832 [Contains: Mja rnr-1 intein; Mja|
            rnr-2 intein]
          Length = 1750

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 47   IQKGSYGRIRYISTRTKIGASFGGTYPSFRSHKH 148
            I+K SYG   YI+ + K+   FG    +F S  H
Sbjct: 1262 IEKISYGHANYINNKIKLDEKFGYLIGAFLSEGH 1295



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>ZFP14_MOUSE (P10755) Zinc finger protein 14 (Zfp-14) (Krox-9 protein)|
          Length = 501

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = +3

Query: 21  FIRVRTITQSKRVHTGESGTYPQGPKLERVLGVHIRRSVH-INMRDIHYFLKSYELQ--- 188
           FIR  T++Q  R+HTGE       P   +  G   R+  H I    +H   K YE +   
Sbjct: 149 FIRRSTLSQHLRIHTGEK------PYKCKECGQPFRQRAHLIRHHKLHTGEKPYECKDCG 202

Query: 189 ------QEYIPEGKKHTG 224
                 QE     + HTG
Sbjct: 203 KAFTVLQELTQHQRLHTG 220



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>S22A4_RAT (Q9R141) Organic cation/carnitine transporter 1 (Solute carrier|
           family 22 member 4)
          Length = 553

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 242 LQVFAKTGVFFTLRNVLLLKLVGFEEIMNVPHVYVNGTTDMYPQNSLQFWSLWICT*FA 66
           +Q+F+     FT+    L  +VG  +I N    ++ GT  +     + F +L +CT FA
Sbjct: 186 VQIFSTNWEMFTV----LFAIVGMGQISNYVVAFILGTEILSKSVRILFSTLGVCTFFA 240



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>ZFP14_HUMAN (Q9HCL3) Zinc finger protein 14 homolog (Zfp-14)|
          Length = 533

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = +3

Query: 21  FIRVRTITQSKRVHTGESGTYPQGPKLERVLGVHIRRSVH-INMRDIHYFLKSYELQ--- 188
           FIR  T++Q  R+HTGE       P   +  G   R+  H I    +H   K YE +   
Sbjct: 181 FIRRSTLSQHLRIHTGEK------PYKCKECGQAFRQRAHLIRHHKLHTGEKPYECKECG 234

Query: 189 ------QEYIPEGKKHTG 224
                 QE     + HTG
Sbjct: 235 KAFTVLQELTQHQRLHTG 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,372,094
Number of Sequences: 219361
Number of extensions: 953274
Number of successful extensions: 3346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3338
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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