ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (E... 48 0.014
2gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.014
3gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.014
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.014
5dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.014
6gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds 48 0.014
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.014
8emb|BX640780.1|HSM806865 Homo sapiens mRNA; cDNA DKFZp686M11210 ... 42 0.86
9gb|U32305.2| Caenorhabditis elegans cosmid B0336, complete sequence 40 3.4
10gb|AF016451.1| Caenorhabditis elegans cosmid C03A7, complete seq... 40 3.4
11emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 3.4
12emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chr... 40 3.4
13gb|AF398588.1| Discoderus cordicollis wingless (wg) gene, partia... 40 3.4
14gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone c... 40 3.4

>gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (Eno1) mRNA, complete
            cds
          Length = 1659

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   accaaaattggagcgagttttgggggtacatatccg 127
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1546 accaaaattggagcaagttt-gggggtacatatccg 1512



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 92    accaaaattggagcgagttttgggggtacatatccg 127
             |||||||||||||| ||||| |||||||||||||||
Sbjct: 58107 accaaaattggagcaagttt-gggggtacatatccg 58141



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>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBb0015J03, complete sequence
          Length = 135940

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   accaaaattggagcgagttttgggggtacatatccg 127
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1894 accaaaattggagcaagttt-gggggtacatatccg 1860



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 92      accaaaattggagcgagttttgggggtacatatccg 127
               |||||||||||||| ||||| |||||||||||||||
Sbjct: 4290566 accaaaattggagcaagttt-gggggtacatatccg 4290600



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>dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048K07, full
            insert sequence
          Length = 1651

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   accaaaattggagcgagttttgggggtacatatccg 127
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1577 accaaaattggagcaagttt-gggggtacatatccg 1543



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>gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds
          Length = 1687

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   accaaaattggagcgagttttgggggtacatatccg 127
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1608 accaaaattggagcaagttt-gggggtacatatccg 1574



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 92      accaaaattggagcgagttttgggggtacatatccg 127
               |||||||||||||| ||||| |||||||||||||||
Sbjct: 4291387 accaaaattggagcaagttt-gggggtacatatccg 4291421



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>emb|BX640780.1|HSM806865 Homo sapiens mRNA; cDNA DKFZp686M11210 (from clone DKFZp686M11210)
          Length = 3661

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 aacctggagcaggtccccctt 254
           |||||||||||||||||||||
Sbjct: 590 aacctggagcaggtccccctt 610



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>gb|U32305.2| Caenorhabditis elegans cosmid B0336, complete sequence
          Length = 40214

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   aaaacacaccggttttcgcaaaaa 235
             ||||||||||||||| ||||||||
Sbjct: 27773 aaaacacaccggtttccgcaaaaa 27750



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>gb|AF016451.1| Caenorhabditis elegans cosmid C03A7, complete sequence
          Length = 41609

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ttcattatttcctcaaatcc 176
             ||||||||||||||||||||
Sbjct: 18141 ttcattatttcctcaaatcc 18160



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>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14
          Length = 306050

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 166    tcctcaaatcctacgagcttcaacaaga 193
              |||||||||||| |||||| ||||||||
Sbjct: 276887 tcctcaaatccttcgagctgcaacaaga 276914



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>emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chromosome 11 Contains a
              heterogeneous nuclear ribonucleoprotein pseudogene and a
              CpG island, complete sequence
          Length = 210386

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    tcattatttcctcaaatcct 177
              ||||||||||||||||||||
Sbjct: 110586 tcattatttcctcaaatcct 110567



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>gb|AF398588.1| Discoderus cordicollis wingless (wg) gene, partial cds
          Length = 504

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 224 ttttcgcaaaaacctggagcaggt 247
           ||||||||||||||||||| ||||
Sbjct: 340 ttttcgcaaaaacctggagaaggt 317



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>gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone ct7-326n13, complete
              sequence
          Length = 195413

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcattatttcctcaaatcct 177
              ||||||||||||||||||||
Sbjct: 184295 tcattatttcctcaaatcct 184314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,712,635
Number of Sequences: 3902068
Number of extensions: 1712635
Number of successful extensions: 27214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 27171
Number of HSP's gapped (non-prelim): 43
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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