ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart50e04 |
|---|---|
| Clone Library Name | barley_pub |
>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor| Length = 2809 Score = 31.6 bits (70), Expect = 0.50 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +2 Query: 194 CEDFHDCCLQDAACPSHSCI-VLLIFCNNAHDLVQSVP 304 CED +C L D CP C+ V+ F + H QS P Sbjct: 1111 CEDIDECSLSDGLCPHGQCVNVIGAFQCSCHAGFQSTP 1148
>CO9_HUMAN (P02748) Complement component C9 precursor [Contains: Complement| component C9a; Complement component C9b] Length = 559 Score = 31.2 bits (69), Expect = 0.65 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 182 PPKLCEDFHDCCLQDAACPSHSCIVLLIFCNNAHD 286 P + CED D C D C + CI + + CN +D Sbjct: 90 PTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDND 124
>CO9_HORSE (P48770) Complement component C9 precursor| Length = 547 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 182 PPKLCEDFHDCCLQDAACPSHSCIVLLIFCNNAHD 286 P + CE+ D C D C + CI + CN +D Sbjct: 90 PTEACEEVEDDCGNDFQCGTGRCIKKRLLCNGDND 124
>MTMR3_HUMAN (Q13615) Myotubularin-related protein 3 (EC 3.1.3.48) (FYVE| domain-containing dual specificity protein phosphatase 1) (FYVE-DSP1) (Zinc finger FYVE domain containing protein 10) Length = 1198 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = -3 Query: 186 GGCLIEEFVPNCLSVLMN--NVCSIWAIYLFLEIL*RLGPCNNRWLS 52 GGC E+ PNC V M N+ SI + L +L P WLS Sbjct: 331 GGCECPEYYPNCEVVFMGMANIHSIRRSFQSLRLLCTQMPDPGNWLS 377
>MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48)| Length = 1075 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = -3 Query: 186 GGCLIEEFVPNCLSVLMN--NVCSIWAIYLFLEIL*RLGPCNNRWLS 52 GGC E+ PNC V M N+ SI + L +L P WLS Sbjct: 331 GGCECPEYYPNCEVVFMGMANIHSIRRSFQSLRLLCTQMPDPGNWLS 377
>G6PI2_CLAXA (P54242) Glucose-6-phosphate isomerase, cytosolic 2 (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 569 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A PS+I+ ++ KD K + G RTH+ G+T R Sbjct: 2 ATPSLISETEAWKDLKAHLEGIKRTHLRELMGDTER 37
>G6PI2_CLACO (P54241) Glucose-6-phosphate isomerase, cytosolic 2 (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 569 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A PS+I+ ++ KD K + G RTH+ G+T R Sbjct: 2 ATPSLISETEAWKDLKAHLEGIKRTHLRELMGDTER 37
>CO9_MOUSE (P06683) Complement component C9 precursor| Length = 548 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +2 Query: 182 PPKLCEDFHDCCLQDAACPSHSCIVLLIFCNNAHD 286 P + CE+ + C D C + CI + CN +D Sbjct: 88 PTQECEEIQENCGNDFQCETGRCIKRRLLCNGDND 122
>CO9_BOVIN (Q3MHN2) Complement component C9 precursor| Length = 548 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 182 PPKLCEDFHDCCLQDAACPSHSCIVLLIFCNNAHD 286 P + CED + C D C + CI + CN +D Sbjct: 88 PTEACEDPEEGCGNDFQCGTGRCIKNRLLCNEDND 122
>CH60_ACTAC (P46398) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 546 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -2 Query: 289 QVVGIVAKNEENNT*MRWACRILETTIMEVFAKLG 185 +VVG+ +NEE N ++ A R +E + ++ A G Sbjct: 424 RVVGLQGENEEQNVGIKLALRAMEAPLRQIVANAG 458
>G6PI1_CLAMI (P54237) Glucose-6-phosphate isomerase, cytosolic 1 (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 568 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A P++I+ ++ KD K + G RTH+ G+T R Sbjct: 2 ASPALISETEAWKDLKAHLEGIKRTHLRELMGDTER 37
>G6PI1_CLAAR (P54234) Glucose-6-phosphate isomerase, cytosolic 1 (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 568 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A P++I+ ++ KD K + G RTH+ G+T R Sbjct: 2 ASPALISETEAWKDLKAHLEGIKRTHLRELMGDTER 37
>TILS_CHLTR (O84847) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 321 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 72 CNNRWLSICIMERIFPFLERLEGK 1 CN R+L + ER+FP+L+ + GK Sbjct: 190 CNERFLRARMRERLFPYLQDVFGK 213
>CO9_RAT (Q62930) Complement component C9 precursor| Length = 554 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +2 Query: 182 PPKLCEDFHDCCLQDAACPSHSCIVLLIFCNNAHD 286 P + CE+ + C D C + CI + CN +D Sbjct: 88 PTQECEEVQENCGNDFQCETGRCIKRKLLCNGDND 122
>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor| Length = 1200 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = -1 Query: 347 HGAVRSWRPQ**SSGEHSGP-GRGHCCKK----*GEQYMNEMGMPHLGDNNHGSLRKAWV 183 HG R WRP G + GP G GH ++ G++ + P+L N GS + W+ Sbjct: 224 HGLRRKWRPHLHRRGSNQGPRGLGHSWRRRDGLGGDRSHVKWSPPYLECEN-GSYKPGWL 282
>C209A_MOUSE (Q91ZX1) CD209 antigen-like protein A (Dendritic cell-specific| ICAM-3-grabbing nonintegrin) (DC-SIGN) Length = 238 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 Query: 183 GCLIEEFVPNCLSVLMNNVCSIWAIYLFLEI 91 GCL+ VP L VL VCS+ + + +++ Sbjct: 45 GCLVHSQVPLALQVLFLAVCSVLLVVILVKV 75
>GRN3_CYPCA (P81015) Granulin-3| Length = 57 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = +1 Query: 226 CGMPISFMYCSPHFLQQCPRPGPEC 300 C P YC P + QC R G C Sbjct: 17 CRSPFGVWYCCPFLMGQCCRDGRHC 41
>GRN2_CYPCA (P81014) Granulin-2| Length = 57 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = +1 Query: 226 CGMPISFMYCSPHFLQQCPRPGPEC 300 C P YC P + QC R G C Sbjct: 17 CRSPFGVWYCCPFLMGQCCRDGRHC 41
>G6PI2_CLALE (P29333) Glucose-6-phosphate isomerase, cytosolic 2A (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) (PGI3) Length = 569 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A P++I+ ++ KD K + G RTH+ G+T R Sbjct: 2 ATPALISETEAWKDLKAHLEGIKRTHLRELMGDTER 37
>CH60_VIBF1 (Q5E8E6) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 548 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 289 QVVGIVAKNEENNT*MRWACRILETTIMEVFAKLG 185 +V G+V NEE N +R A R +E I ++ G Sbjct: 425 KVAGLVGDNEEQNVGIRVALRAMEAPIRQITKNAG 459
>Y036_TREPA (O83079) Probable metal transport system membrane protein TP0036| Length = 266 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 257 LLIFCNNAHDLVQSVPLKITTGVAMSVL 340 L F N HDL+ S+ L ++ G+A+++L Sbjct: 76 LRAFFKNHHDLILSIVLSLSVGIAVTLL 103
>AL2S2_HUMAN (Q9C0K7) Serine/threonine-protein kinase ALS2CR2 (EC 2.7.11.1)| (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein) (ILP-interacting protein) (CALS-21) Length = 418 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = +1 Query: 4 TFKPFKKWEYSLHNAYAQPSVITWSQPSKDFKEQINGPNRTH 129 + +P K+ E S+H ++WS+PS E + N +H Sbjct: 16 SLRPEKQSETSIHQYLVDEPTLSWSRPSTRASEVLCSTNVSH 57
>GP158_HUMAN (Q5T848) Probable G-protein coupled receptor 158 precursor| Length = 1215 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = -1 Query: 347 HGAVRSWRPQ**SSGEHSGP-GRGHCCKK----*GEQYMNEMGMPHLGDNNHGSLRKAWV 183 HG R WRP G + GP G GH ++ G++ + P+L N GS + W+ Sbjct: 224 HGLRRKWRPHLHRRGPNQGPRGLGHSWRRKDGLGGDKSHFKWSPPYLECEN-GSYKPGWL 282
>CDD_PASMU (Q9CP11) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +2 Query: 23 NGNILSIMHMLNHLLLHGPSLQRISRNK*MAQIEHTLFMSTERQLGTN 166 N ++ ++ LNHLLL G +LQ I R + + H + L N Sbjct: 236 NPSLPALQVALNHLLLSGDTLQNIQRIVMIEKANHLCYRHMAEDLVAN 283
>G6PI1_CLACO (P54235) Glucose-6-phosphate isomerase, cytosolic 1 (EC 5.3.1.9)| (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 569 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 52 AQPSVITWSQPSKDFKEQINGPNRTHIVHEHGETIR 159 A P++I+ ++ KD K + G +TH+ G+T R Sbjct: 2 ASPALISETEAWKDLKSHLEGIKKTHLRELMGDTER 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,599,833 Number of Sequences: 219361 Number of extensions: 1203719 Number of successful extensions: 2870 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2870 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
