ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTMR7_PONPY (Q5R6F6) Myotubularin-related protein 7 (EC 3.1.3.-) 30 1.1
2MTMR7_HUMAN (Q9Y216) Myotubularin-related protein 7 (EC 3.1.3.-) 30 1.1
3MTMR7_MOUSE (Q9Z2C9) Myotubularin-related protein 7 (EC 3.1.3.-) 30 1.9
4BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4 28 4.2
5SYM_RHOBA (Q7URP3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 28 5.5
6Y2300_METMA (Q8PUN2) UPF0173 metal-dependent hydrolase MM2300 27 9.4
7Y1308_METAC (Q8TR74) UPF0173 metal-dependent hydrolase MA1308 27 9.4

>MTMR7_PONPY (Q5R6F6) Myotubularin-related protein 7 (EC 3.1.3.-)|
          Length = 660

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 212 IPDHYWYLFCDCNLAYRVLCSYPVDM 135
           +P+HYW L  D N  YRV  SYP ++
Sbjct: 141 LPNHYWQL-SDVNRDYRVCDSYPTEL 165



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>MTMR7_HUMAN (Q9Y216) Myotubularin-related protein 7 (EC 3.1.3.-)|
          Length = 660

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 212 IPDHYWYLFCDCNLAYRVLCSYPVDM 135
           +P+HYW L  D N  YRV  SYP ++
Sbjct: 141 LPNHYWQL-SDVNRDYRVCDSYPTEL 165



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>MTMR7_MOUSE (Q9Z2C9) Myotubularin-related protein 7 (EC 3.1.3.-)|
          Length = 660

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 212 IPDHYWYLFCDCNLAYRVLCSYPVDM 135
           +PD+YW L  D N  YRV  SYP ++
Sbjct: 141 LPDNYWQL-SDVNRDYRVCDSYPTEL 165



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>BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4|
          Length = 710

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -1

Query: 346 RLVMPL--------HWTTMDMVAAHPPLLKNATSTTSLFISCLIMFDSC 224
           RL +PL        HWT +  +A  PPL   A    ++ I+ L  FD C
Sbjct: 282 RLELPLPWASESLYHWTVVKDMAKVPPLYILAAFIPAIMIAGLYFFDHC 330



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>SYM_RHOBA (Q7URP3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 679

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 209 PDHYWYLFCDCNLAYRVLCSYPVDMDKNNVIDVWWSTD 96
           P +YWY++ D  + Y        D +  ++ D WW +D
Sbjct: 245 PGNYWYVWFDAPIGYIASTQQWCDANGEDLAD-WWKSD 281



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>Y2300_METMA (Q8PUN2) UPF0173 metal-dependent hydrolase MM2300|
          Length = 230

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 349 PRLVMPLHWTTMDMVAAHPPLLKNA 275
           PR+V+P+H+ T D++   P   + A
Sbjct: 186 PRIVVPMHYNTFDVIRQDPEEFRKA 210



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>Y1308_METAC (Q8TR74) UPF0173 metal-dependent hydrolase MA1308|
          Length = 230

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 349 PRLVMPLHWTTMDMVAAHPPLLKNA 275
           P++V+P+H+ T D++   P + + A
Sbjct: 186 PQIVVPMHYNTFDVIKQDPEVFRKA 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,623,238
Number of Sequences: 219361
Number of extensions: 1127307
Number of successful extensions: 2693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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