ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.019
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
3dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
4gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete se... 42 1.2
5emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chr... 42 1.2
6dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.2
7ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 ... 42 1.2
8ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 ... 42 1.2
9gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cance... 40 4.7
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 4.7
11gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, com... 40 4.7
12gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, co... 40 4.7
13gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome... 40 4.7
14gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complet... 40 4.7
15ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.7
16emb|BX016260.1|CNS08KPK Single read from an extremity of a full-... 40 4.7
17emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in l... 40 4.7
18gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, com... 40 4.7
19gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, comp... 40 4.7
20gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, compl... 40 4.7
21ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA 40 4.7
22gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.7
23gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence 40 4.7
24gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, comp... 40 4.7
25gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene... 40 4.7
26emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 i... 40 4.7
27emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in ... 40 4.7
28emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 i... 40 4.7
29dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.7
30gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, comple... 40 4.7

>ref|XM_482956.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1218

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 253  ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagct 300
            |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||
Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagct 1151



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 253      ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagct 300
                |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||
Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagct 23538584



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>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 253   ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagct 300
             |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||
Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagct 18359



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>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence
          Length = 163910

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    aagcacatattatatgtgcta 91
             |||||||||||||||||||||
Sbjct: 98064 aagcacatattatatgtgcta 98084



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>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the
             3' end of the gene for a novel protein (FLJ31204),
             complete sequence
          Length = 106636

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    tataaagcacatattatatgt 87
             |||||||||||||||||||||
Sbjct: 54287 tataaagcacatattatatgt 54307



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 249     ttacggcgtcggcggcgctca 269
               |||||||||||||||||||||
Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692



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>ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 (ENSANGG00000016941),
            partial mRNA
          Length = 1459

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 286  cgtacttggcgagctcctccgcgtt 310
            |||||||||| ||||||||||||||
Sbjct: 1264 cgtacttggccagctcctccgcgtt 1240



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>ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 (ENSANGG00000016941),
            mRNA
          Length = 1731

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 286  cgtacttggcgagctcctccgcgtt 310
            |||||||||| ||||||||||||||
Sbjct: 1536 cgtacttggccagctcctccgcgtt 1512



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>gb|AC152976.1| Mus musculus  BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194151

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    catataaagcacatattata 84
             ||||||||||||||||||||
Sbjct: 70465 catataaagcacatattata 70446



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    cggcgtcggcggcgctcatc 271
              ||||||||||||||||||||
Sbjct: 113747 cggcgtcggcggcgctcatc 113766



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>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence
          Length = 257790

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     catataaagcacatattata 84
              ||||||||||||||||||||
Sbjct: 255591 catataaagcacatattata 255610



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>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence
          Length = 186488

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     catataaagcacatattata 84
              ||||||||||||||||||||
Sbjct: 152716 catataaagcacatattata 152697



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>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence
          Length = 203891

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     taatgactcttgcacaagac 112
              ||||||||||||||||||||
Sbjct: 129318 taatgactcttgcacaagac 129337



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>gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complete cds
          Length = 740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 tacttggcgagctcctccgc 307
           ||||||||||||||||||||
Sbjct: 202 tacttggcgagctcctccgc 183



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>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0)
           partial mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 74  cacatattatatgtgctaat 93
           ||||||||||||||||||||
Sbjct: 274 cacatattatatgtgctaat 255



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>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 974

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcacctccacattccggccggtct 348
           ||||||||||||||| ||||||||
Sbjct: 310 gcacctccacattcccgccggtct 287



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>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19,
             complete sequence
          Length = 147881

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tacttggcgagctcctccgc 307
             ||||||||||||||||||||
Sbjct: 57178 tacttggcgagctcctccgc 57197



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>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence
          Length = 180854

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   ttgaacacatacattaaact 209
             ||||||||||||||||||||
Sbjct: 37889 ttgaacacatacattaaact 37870



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>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence
          Length = 73460

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   ttgaacacatacattaaact 209
             ||||||||||||||||||||
Sbjct: 50721 ttgaacacatacattaaact 50702



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>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence
          Length = 160046

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    ttgaacacatacattaaact 209
              ||||||||||||||||||||
Sbjct: 151905 ttgaacacatacattaaact 151886



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>ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA
          Length = 1033

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 tacttggcgagctcctccgc 307
           ||||||||||||||||||||
Sbjct: 204 tacttggcgagctcctccgc 185



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 318     ccaccgggcacctccacattccggccgg 345
               |||||||||| ||| |||||||||||||
Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864



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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ataattaaatcaaacaaaca 156
              ||||||||||||||||||||
Sbjct: 124975 ataattaaatcaaacaaaca 124994



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>gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, complete cds
          Length = 730

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 tacttggcgagctcctccgc 307
           ||||||||||||||||||||
Sbjct: 211 tacttggcgagctcctccgc 192



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>gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene, complete cds
          Length = 2987

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 tacttggcgagctcctccgc 307
           ||||||||||||||||||||
Sbjct: 879 tacttggcgagctcctccgc 860



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>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20,
             complete sequence
          Length = 73842

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tataaagcacatattatatg 86
             ||||||||||||||||||||
Sbjct: 27565 tataaagcacatattatatg 27584



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>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete
              sequence
          Length = 255824

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    tacttggcgagctcctccgc 307
              ||||||||||||||||||||
Sbjct: 226591 tacttggcgagctcctccgc 226610



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>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20,
             complete sequence
          Length = 163967

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ttttcatgtcatataaagca 75
             ||||||||||||||||||||
Sbjct: 59860 ttttcatgtcatataaagca 59879



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>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete
             sequence
          Length = 151887

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   ttgaacacatacattaaact 209
             ||||||||||||||||||||
Sbjct: 81263 ttgaacacatacattaaact 81244



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>gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 tacttggcgagctcctccgc 307
           ||||||||||||||||||||
Sbjct: 190 tacttggcgagctcctccgc 171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,317,174
Number of Sequences: 3902068
Number of extensions: 3317174
Number of successful extensions: 72839
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72677
Number of HSP's gapped (non-prelim): 162
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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