ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U47144.3| Caenorhabditis elegans cosmid ZC53, complete sequence 38 1.7
2gb|U58734.2| Caenorhabditis elegans cosmid T27A10, complete sequ... 36 6.6
3gb|AC024137.1| Caenorhabditis elegans cosmid F59D8, complete seq... 36 6.6
4gb|U42835.1| Caenorhabditis elegans cosmid C04F6, complete sequence 36 6.6
5emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chr... 36 6.6
6emb|CR628336.1| Legionella pneumophila str. Paris complete genome 36 6.6
7gb|U64599.1| Caenorhabditis elegans cosmid F56B6, complete sequence 36 6.6
8gb|AC093371.6| Genomic sequence for Mus musculus, clone RP23-36P... 36 6.6
9ref|NM_076212.3| Caenorhabditis elegans VITellogenin structural ... 36 6.6
10ref|NM_076211.2| Caenorhabditis elegans VITellogenin structural ... 36 6.6
11ref|NM_076188.3| Caenorhabditis elegans VITellogenin structural ... 36 6.6
12gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 36 6.6
13gb|AC006647.1|AC006647 Caenorhabditis elegans clone F59D8, compl... 36 6.6
14dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 36 6.6
15emb|X03044.1|CEVIT5G Caenorhabditis elegans vit-5 gene for vitel... 36 6.6
16gb|M22540.1|RABIGKCGA Rabbit Ig kappa L chain (IVSK1B95) gene, p... 36 6.6
17dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 36 6.6

>gb|U47144.3| Caenorhabditis elegans cosmid ZC53, complete sequence
          Length = 35061

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   gggggacaaattcccgggt 48
            |||||||||||||||||||
Sbjct: 8569 gggggacaaattcccgggt 8587



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>gb|U58734.2| Caenorhabditis elegans cosmid T27A10, complete sequence
          Length = 35114

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 845 aacccaactgaacttgaa 828



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>gb|AC024137.1| Caenorhabditis elegans cosmid F59D8, complete sequence
          Length = 13797

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 9442 aacccaactgaacttgaa 9425



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 878 aacccaactgaacttgaa 861



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>gb|U42835.1| Caenorhabditis elegans cosmid C04F6, complete sequence
          Length = 25083

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aacccaactgaacttgaa 21
             ||||||||||||||||||
Sbjct: 10964 aacccaactgaacttgaa 10981



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>emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chromosome 1, complete
             sequence
          Length = 68709

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     caactgaacttgaaatta 25
             ||||||||||||||||||
Sbjct: 14575 caactgaacttgaaatta 14592



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 9       aactgaacttgaaattac 26
               ||||||||||||||||||
Sbjct: 2771253 aactgaacttgaaattac 2771236



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>gb|U64599.1| Caenorhabditis elegans cosmid F56B6, complete sequence
          Length = 41984

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aacccaactgaacttgaa 21
             ||||||||||||||||||
Sbjct: 38077 aacccaactgaacttgaa 38060



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>gb|AC093371.6| Genomic sequence for Mus musculus, clone RP23-36P10, complete sequence
          Length = 177872

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     caacccaactgaacttga 20
             ||||||||||||||||||
Sbjct: 84209 caacccaactgaacttga 84192



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>ref|NM_076212.3| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-3) (vit-3) mRNA, complete cds
          Length = 4861

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179



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>ref|NM_076211.2| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-4) (vit-4) mRNA, complete cds
          Length = 4842

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179



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>ref|NM_076188.3| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-5) (vit-5) mRNA, complete cds
          Length = 4862

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179



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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     aactgaacttgaaattac 26
             ||||||||||||||||||
Sbjct: 98129 aactgaacttgaaattac 98146



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>gb|AC006647.1|AC006647 Caenorhabditis elegans clone F59D8, complete sequence
          Length = 13797

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 9442 aacccaactgaacttgaa 9425



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 878 aacccaactgaacttgaa 861



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>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105
          Length = 340000

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      aactgaacttgaaattac 26
              ||||||||||||||||||
Sbjct: 249759 aactgaacttgaaattac 249776



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>emb|X03044.1|CEVIT5G Caenorhabditis elegans vit-5 gene for vitellogenin
          Length = 5375

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4549 aacccaactgaacttgaa 4566



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>gb|M22540.1|RABIGKCGA Rabbit Ig kappa L chain (IVSK1B95) gene, partial cds
          Length = 1349

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  actgaacttgaaattacc 27
           ||||||||||||||||||
Sbjct: 131 actgaacttgaaattacc 148



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>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML
             region, complete sequence
          Length = 105567

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     aactgaacttgaaattac 26
             ||||||||||||||||||
Sbjct: 41704 aactgaacttgaaattac 41721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,722
Number of Sequences: 3902068
Number of extensions: 269722
Number of successful extensions: 66097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66053
Number of HSP's gapped (non-prelim): 44
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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