ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart50d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-r... 31 0.71
2FGF10_HUMAN (O15520) Fibroblast growth factor 10 precursor (FGF-... 29 2.7
3ARGD_CAUCR (Q9A652) Acetylornithine aminotransferase (EC 2.6.1.1... 29 3.5
4EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilo... 28 7.8
5MTG8R_MOUSE (O70374) Protein CBFA2T2 (MTG8-like protein) (MTG8-r... 28 7.8
6NIKB_ECOLI (P33591) Nickel transport system permease protein nik... 28 7.8

>MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein|
           1)
          Length = 586

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 177 EEDTAPSETHVNKLCIIIVAPRRQPVIPL 91
           E +TAP+E  V ++C I  APR  P + L
Sbjct: 233 ERETAPAEPPVKRVCTISPAPRHSPALSL 261



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>FGF10_HUMAN (O15520) Fibroblast growth factor 10 precursor (FGF-10)|
           (Keratinocyte growth factor 2)
          Length = 208

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 192 PGCCCCCF 215
           PGCCCCCF
Sbjct: 17  PGCCCCCF 24



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>ARGD_CAUCR (Q9A652) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 405

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 29  ASSSPAGGGYPISEC-KNNEAVRGMTGCLRGAT 124
           A +   GGG+PI  C    EA +GMT    G+T
Sbjct: 251 AVAKALGGGFPIGACLATTEAAKGMTVAAHGST 283



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>EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilon subunit|
           (eIF-2B GDP-GTP exchange factor)
          Length = 721

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
 Frame = +2

Query: 2   SHYQTNIYRASSSPAGGGYPISE-------------CKNNEAVRGMTGCLRGATMIIHNL 142
           +H + NIYR      G G  + E             C    +V G  GC  G  +++   
Sbjct: 336 THSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSNCSITNSVIG-PGCCIGDNVVLDRA 394

Query: 143 FTWVSLGAVSSSLVRQTGXXXXXXRQDDVSMEVHLV 250
           + W  +   S + + Q+        ++ V+++ H V
Sbjct: 395 YLWKGVQVASGAQIHQSLLCDHAEVKEQVTLKPHCV 430



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>MTG8R_MOUSE (O70374) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein|
           1)
          Length = 574

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 177 EEDTAPSETHVNKLCIIIVAPRRQPVI 97
           E DT P E    ++C I  APR  P +
Sbjct: 218 ERDTVPPEPPAKRVCTISPAPRHSPAL 244



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>NIKB_ECOLI (P33591) Nickel transport system permease protein nikB (EC|
           3.6.3.24)
          Length = 314

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 104 GCLRGATMIIHNLFTWVSLGAVSSSLV 184
           G L G TMII N+F W  +G  + S +
Sbjct: 243 GELIGGTMIIENIFAWPGVGRYAVSAI 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,776,873
Number of Sequences: 219361
Number of extensions: 747706
Number of successful extensions: 2151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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