>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1099

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 150 VSIQFSMNDPHSDNMFMLHRVDSKPRLSVPTVNPRVQRKKP 272
           +++QF++ +PHSDN          PR+ V  VNPR  R  P
Sbjct: 838 MNVQFAIEEPHSDN----------PRIYVLEVNPRASRTVP 868

>NOL11_XENLA (Q6INI5) Nucleolar protein 11|
          Length = 720

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 1   DPNEYPSSKFVHILVFYNNTVQYSLKLTKYTPLNYFYLFMEKQEKPIQAVSVYS 162
           DP  YP S FV ++    NT+ YSL      P +   LF+EK++ P+  + ++S
Sbjct: 444 DPKFYPQSSFVQLV--QTNTLSYSL-----CP-DLLSLFLEKRDVPLLQLCLHS 489

>SYG_MYCPE (Q8EW64) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 462

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
 Frame = +3

Query: 48  LQQYSTIFAEIDKIHSPQLFLFIYGKAREAHTSSVSIQFSMNDPH---------SDNMFM 200
           L+   T   +  KIH   + +  Y K   AH SS ++ F  N PH             F 
Sbjct: 239 LESIKTFLFKTLKIHENNIKIIDYPKEELAHYSSRTVDFLYNFPHGYSELWGLADRGEFD 298

Query: 201 LHRVDSKPRLSVPTVNPRVQRK------KPSMTVENLLAVV 305
           L    +  + S+  +N   + K      +PS+ VE LL  +
Sbjct: 299 LTAHQNLSKKSLEYLNEETKEKFVPSVIEPSVGVERLLYAI 339

>HEM32_STRAW (Q82P95) Porphobilinogen deaminase 2 (EC 2.5.1.61) (PBG 2)|
           (Hydroxymethylbilane synthase 2) (HMBS 2)
           (Pre-uroporphyrinogen synthase 2)
          Length = 314

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 311 FSHDGKEVFNSHAWLFPLDP 252
           F+ DGK V N+H W   LDP
Sbjct: 270 FTLDGKTVLNAHEWAGRLDP 289

>Y577_AQUAE (O66845) Hypothetical protein aq_577|
          Length = 204

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 28  FVHILVFYNNTVQYSLKLTKYTPLNYFYLFMEKQEKPIQAVSVYSSQ*MIHIATICLCYT 207
           F  IL+F+N+T QY +K+      +     + K +KP+ + S+  S  +   A +   +T
Sbjct: 43  FFFILLFFNSTTQYFVKVLSKNEKSLEIKEIFKIKKPVFSFSLGESVYLFFTALLYYLFT 102

Query: 208 GWTA 219
            + A
Sbjct: 103 KFYA 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,398,175
Number of Sequences: 219361
Number of extensions: 994633
Number of successful extensions: 2345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)